RNA id: AMCG00011345


Basic Information

Item Value
RNA id AMCG00011345
length 4503
RNA type mRNA
GC content 0.40
exon number 3
gene id AMCG00011345
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 19438223 ~ 19444151 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTTAAAGCGGCATACTACGTATCAATGCATTTACTGAAGGCTTCAACCTGTCCTggtataaataaatcactacaaGGATCATTCATCGAAGCCAGATTGTAACCTCCAGACCAGACTAGTGTCCCCAGATAAGGAGATGCCTCTGGCCAATCGCACAGCTCGCATTTCGTGAAATCAACATGGCGGGTGACAAGgatCCTCTCTCGAAGCTAAAGGACCTTGCACAGCTAAAAGACCAGTTGGAGGACATCCAGAAACGAGTCGAAAACGAAGTGCAAGCGGGAATACCGCAGGGGGGGAGTCTGTTGGCCTCCCCGTTCCTGAAGGGGTTCCTGGCTGGCTATGTGGTGGCGAGGCTGCGCTCCTCAGCTGTGCTGGGGGTGGTAGTGGGGACCTGCACAGGCATATATGCGGCACAGAACTTTGACGTTCCCAACATAGAAAAATCTGTCAAGGACTATTACAACTCCATGAAGAAACGGCCTAATTAACTAGGAGAGAAGCTTCCCCAGAGAGTCGGGAAACTCTATGCCTTTTCCTGTACTCCAGAAACTGTCCCAAACCAAAGCTATCTCTTGGGGGGTGCTGATTTTCTCTGTCCTTTTAAACTGGAGACTGCTTTATAATTTAAAGGGGGTAGTGTAGTCCATTTTGGGACAACGTGCAAAGAATTTATTGGCTAATGcatgatagaaaaaaaaaaatcatgggtCCAATGTATCTTCATAACaagatatctatatatagtttgcaataagaacaataatactTTTGTGTACTTCTTTTCAAGTTCATCCTATGTGCTATCCAGATATACCAATCACAGGCTCTGGCTTTGTGGGTTTGTTTACTTGCCTTACTTGATAATGTTTACTTGTTCTGTGTATCTTAATTTATCTTGAATCTAGAACAGAACATTTAAGTAATAGTAGTTTGTTTCCATAATCACTGAAAAACAGATGCTGGTGCTGGTTTGTGGGTTACGAAGGAGCAgctactttaaataaaacaaaccaacaaattaaaaaaacatgaatattcagagTGAACACATTTTCCCAATTCATGTATCAGACTACAATTTATCAAACCTGTTTTATGACATCATGACGAATTCAGTTCTGTAATATTAGTTATAGTTTGAGGTGAGGGTTCTGCTTTGTACTTTTCCTACAGAGCGTCCACAGTTCGCTGAACTACtaagtttctgtttttctgacatTCAGTAACTAAGAAAAAGCTCAATATAAAACGTCTGAACAAAATTgttagtattttatttctgttgtaaaGTCCTTATTGAACACTTCTGTTTTGGATCTGGATTTTTTAAGGTCCTAAATCTAAGATAGCAACCTAAAAATAATTTAGCCAAACAGCTGTGTCATGGTGTTGGTGCTATTATAGAGAACCTAATCTTCAAGAATATTGGTATGGCCCTTCTGCAAAGAGACGTGGAAGTAAAAACATTGGTTAGTGAGGGAACCAacttagattttttgttttgtttttgtttttgatctggATTTTTATGTTGTTCTGTAAACATGATTGTGATTGAAAACATGGACACTACAGATCCTACTCAGAAGAGACTATGGTCCACCCAAGCTGGCTGGAGTCTCCTCCTTGCTGCCTCTGTCCTTATATATGGCTCTCACGCCCCTCTCATCACGCTTTGTAAAGTGGATGGTAAGGTGCCTTTCAGCTCCTCATCTTGTGTGGTTCTGATCGAGTTGACCAAGCTCCTGGTCTCCTTGTGGCTGCTCCTGGTCTGGGACCTGCACTCCCTGCGAGGTGCTCTTTCCTGGCGCCATGTGCTTCCCTACGCCATCCCAGCTCTCCTGTACGCAGTCAATAACAATTTGGTGGTGTACATGCAAGTTCACATGGACCCCAGCACCTTCCAAGTCCTGAGTAACCTGAAAATCGTCTCCACTGCCCTGCTGTATAGTGCCTTCCTGCGTAAACGACTGCAGCCTGTTCAGTGGCTGGCAATATGTTTGCTCATGATGGCTGGAGTGTGCCACACTTACAGCAGCCTTGACAACACGGAGCAGGAGAAGGACCAAGCAGTAGTAGGAACTCACTTCCACATTAGTGGCCCAGGTCTGCTGTTGGTCCTCACTTATACCCTTGTGTCAGGCCTGGCCGCCGTCTACACGGAGCGCATTCTGAAGACCCAGCGGCTGCCCCTGAACTTGCAGAACTTCTTCCTGTACGTGTTTGGGGTGCTGGTGAACTTCAGCATACACTTTACTCACACCAGCCCAGGCTTCTTTGAGGGCTTCTCCCCCCTGGTGTGGGCCATCGTGGCCAGCCAGGCTCTGAACGGCTTGCTCATGTCCGTGGTGATGAAGCACAGCAGCAACATCACGCGCCTCTTTGTCATCTCCTGCTCCATGCTGGTGAACGCGGCTCTGTCCGTCTGGCTGTTTGGCCTGCAGCTCACGCCTCTGTTCTTTGTTGCTGTTCTACTGATTGGTCTGGCCATTCACTTGTACTATCATGTGTCATGAAGTTGGATTCCCTTTCTAAATTTAAAGTATGAAAAGTATAATTTTGTAACTTTAAGTAATTCAATCACTGTTGTGCAACAAAAGCATTGATCATCTCTAATGTGATTACAAgtcatacatttttgttctttataaGGTGTCCCAAGTTTCAGCAGTGTGTCCAGTGTTTTAGGTACACTCATGTACACTTCTTGTTGATTTAGTCTAACAGTGGCACCTTTAACAACCTCAGCTGCTTTAAAGCACTTTAGGAAAAcgtttttaaagtttatattgCTGCAGATTGTGTTGTCCAaagccataataataataaactatgcTTGTTGcaaactttttaaatttgaattgatTATGGTTTAGCAATACTGATACCTTCAGCTTCACTGCTGCCCGCCTTTAAGCAGATTGCTATTGACTCTGCGGTTACATGTCATTCTCACCATGATTTGTAACCATATACAGATTTCATGacttatgtttatttcattgacatatcttgtttgttgttttgctttgtattctttaaacaacgtgtttaaaacatatttgtattgctctctaaataaacagctaGTAACTCTGTGCACCTTTTAACTTTCAGTAGCTTATAGAAGAGATTccccaaaacataaaatagatgCAGATATTCAGCACCGTTATTGCCAAGGAATAGAAGTATAAATTAATATGGTAatgtaaaatcagaaataaacaatactgtttaaatgtttagttaaCTACTTTGagtttatgtaattgtttttcttgttcacCTGAAATGTAACATTGTTACTAATATAAACCATTCTCTCCCCTCACTTTGAGTTTAAGGTCACTGGTACTGTTATGTCAATTCTAAACCCAGGTGTTCATAGTCATTAAAGGTACTGTATGTCTAAAGGTATTTGTGTTCAATGCAGTAATTCATTGAATGCAGATTAGTATGCAAACAGactggaaattataatacaagtattagtgtttaatgatttaatttcaggaTTCAATTgctataatgtaacattttcaagTGCCGACGGAAATCTTCATTCTCATAGGTTTAAATTGTTGTGCTGATTGTGGAATCAAATCTAACTAATTTAAGGCAGACAATTAGGTTTTAGGAaagtatacattaaattaacagGGGAGACgatggatttgatttaatggGTTTCAAACACTATGGATTACTAACCAAATTAAATTCTGCTGTCCAGTTGTCTGTTGAATTCTCTTTGCAATTGCAATTCCCAGTTTAGTGTAATTTAAACCTATCTTGCTTCTTttacacacttttacattaCTTGTAGCACGAGATCTATTATTTCAGGAGTGTGTGCTTCTCATTCTTTCAGTATAACCCTTAGGCACCCAGTGTGAAAAATATGTCCGATCCAATATAAGAGAATGCATAAACACCACCAATTAAGTGTTATTCAGTTACAActttaatcttattttaacGGCAGaccattttaattctgttaatttATGTGTGTGGATGAATGAGACCACATGTGAGAGATTAAAGCAAGTTAATTGACtgagatagggagttgtctggAAACCTTGAATTCAGTGGAGGGGAACTATATAGCCCTGTTGTTAGACACCATTTTGGTTTTCTTACCCTCAGCTGTAATTTAGGCCAGAATGGCAATTGAATAACTGCACAGTGAATAACTAAAAGCTGTCCGCCATTGTTGAACATTTCAGGCAGCATCTTGCTGATGATGTTGGGTTCCCCTGTGGTCCCTCTTAACACAGAGAGAGTCTCTTAGTTCTTCAAGTGCTACGTGAATAAAAGGTGAAAATGTGAAGTTAGTCATCTTTACTTAAATGCAAGTCAGTATGTCAAGCAGTCACTAACACCACGTAATGTTAGTTTGTACAGGTTTTATCTCTGGTTGAAATTGTATGTCCTTTGTTCGGTTGGTGTTTTGCGTAAAGTATTCCATAGATTTGAGATGTATAGGTCTG

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006812 cation transport biological_process
GO:0006820 anion transport biological_process
GO:0008643 carbohydrate transport biological_process
GO:0006862 nucleotide transport biological_process
GO:0016020 membrane cellular_component
GO:0015075 ion transmembrane transporter activity molecular_function

KEGG:

id description
K15273 SLC35A4; solute carrier family 35 (probable UDP-sugar transporter), member A4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132566 lncRNA downstream 10276 19422435 ~ 19427947 (-) False G105968
TU132579 lncRNA downstream 25208 19410368 ~ 19413015 (-) False G105970
TU132578 lncRNA downstream 25208 19410599 ~ 19413015 (-) True G105970
TU132565 lncRNA downstream 61315 19376513 ~ 19376908 (-) True G105967
TU132493 lncRNA downstream 193740 19233722 ~ 19244483 (-) True G105918
TU132642 lncRNA upstream 144024 19588175 ~ 19588972 (-) True G106023
TU132842 lncRNA upstream 496878 19941029 ~ 20014274 (-) True G106163
TU132867 lncRNA upstream 627331 20071482 ~ 20115868 (-) True G106183
TU132868 lncRNA upstream 627331 20071482 ~ 20086764 (-) False G106183
TU132869 lncRNA upstream 627331 20071482 ~ 20095242 (-) False G106183
AMCG00011335 mRNA downstream 116184 19313827 ~ 19322039 (-) True AMCG00011335
AMCG00011336 mRNA downstream 130515 19296084 ~ 19307708 (-) True AMCG00011336
AMCG00011332 mRNA downstream 176271 19247624 ~ 19261952 (-) True AMCG00011332
AMCG00011333 mRNA downstream 220384 19209822 ~ 19217839 (-) True AMCG00011333
AMCG00011334 mRNA downstream 230194 19200496 ~ 19208029 (-) True AMCG00011334
AMCG00011349 mRNA upstream 55209 19499360 ~ 19513320 (-) True AMCG00011349
AMCG00011348 mRNA upstream 73280 19517431 ~ 19539640 (-) True AMCG00011348
AMCG00011350 mRNA upstream 106076 19550227 ~ 19570328 (-) True AMCG00011350
AMCG00011355 mRNA upstream 277003 19721154 ~ 19726365 (-) True AMCG00011355
AMCG00011357 mRNA upstream 286341 19730492 ~ 19759043 (-) True AMCG00011357
TU132572 other downstream 25208 19410368 ~ 19413015 (-) False G105970
TU132457 other downstream 332954 19102293 ~ 19105269 (-) True G105890
TU132382 other downstream 1247028 18184484 ~ 18191195 (-) True AMCG00011316
TU132383 other downstream 1247028 18184484 ~ 18191195 (-) False AMCG00011316
TU132338 other downstream 1437778 17999668 ~ 18000445 (-) True G105793
TU132729 other upstream 421463 19865614 ~ 19867902 (-) True AMCG00011356
TU133362 other upstream 3609165 23053316 ~ 23060966 (-) True AMCG00011409
TU133710 other upstream 5568054 25012205 ~ 25018332 (-) True AMCG00011445
TU134083 other upstream 7062792 26506943 ~ 26516507 (-) True AMCG00011485
TU134703 other upstream 10180933 29625084 ~ 29625387 (-) True G107713

Expression Profile