RNA id: AMCG00011348


Basic Information

Item Value
RNA id AMCG00011348
length 5059
RNA type mRNA
GC content 0.36
exon number 13
gene id AMCG00011348
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 19517431 ~ 19539640 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gAAATCCAAATTTTTGTGCTGATTTCTTCATCCTTGTGGCCTAAACAAGAAAGAAGAAGTTCTGATGGCAAGAAGCTGACAACTGAAAACTGAGTCATTAGTTTCCTTCATGCGCCTGAAGAGAAGAGGTGTGTGAGACTGAGGAGCCCGATTGTTACAACTTGAGCTCAACTTTGGGGACAGGATGCTGTGTCTGGTTCTGATCTTTGGGGTCCTGCTTTGTGCAGCCCAAGGTTTGGAACCACCATTAATTCAGCCAAACCAGACAGAAATTATCATTAACTCTGGGGCAATCCTACATCTTCACTGTTCTGGTGAAAAACCTGTGAACTGGATTGCAGCATTTGCAAAACATAAGAAGCTTATAAAAACTAGTGGAACCACCAGTGTATTCAAGGCAAAAGCTACAGTGGATTTTACAGGCAcctacaaatgtatatataaggACCAGCAAAACCTGTTTTCCTCAATACATGTTTATGTCAAAGATCCAGTAAAGCTATTCTTAGATGAAAAGTATGGGTACCATTTCTTGCGGAAGGAAGGAGAGGATATTACCTTGCCCTGTCTGCTGACCGATCCGAGTGCCACTGACTTCTCACTCAGAATGGAAAATGGTAGCTCTGTCCCTCGTGGGATGAACTACACTGTTGATCCAAAGAGAGGAATAACCATTCGAAACCTGCAACCCCGCTTTAATGCTGACTACGTTTGCCGGGCCAAAAAGGATGGAGAATTCAAATTCTCTATAGCTTTCAGCATCAATGTCGTGCAAAAGTTGCGTTCTCCACCTTATGTGTACCTGGACACAGACGAATATGTGCGCATTGTTGGTGAGACACTTGAAATCAGTTGTACTACGAACAACCcaaattttaattataatgtgacCTGGAAGCACTCTACAAGGGAGAGGTTACAAGCGTCGGAAGAGATTGGTTATGAGGGAAGTAAACTGGCTATAAGGAGTATTTTGAAAATTCCTGCGGTGAGCATGTCAGACACAGGGAATATAACTTGCGTAGGAGCAAATGAAGCTGGTACAAACAGTTCAACCACATACCTGCAAGTTGTAGATAAAGCCTACCTCAGGTTGTCAACCCCAATGGACACTGTCCTTGAAGTTCAAGAAGGACAAGACTTGGAGCTGAAGGTTTTAATTGAGGCCTACCCTGTCATTTTGCAGAAAGGATGGGTCACACCCAGGTCACATAATAATTCTGCTCACAAACAAGTGTTTCACAAATTCAACAACAGATACGAGGCCATTTTGTTATTGAGGAGAATGAAAGCTGAAGAGAGAGGACAGTACATCTTCTTTGCCaagaacacaaaagaaaatgcttcTGTTACGTTTCATATTCACTTTCACCAGAAGCCGACGGCTGAGGTGAAGTGGCACAACACCAACAACCTGAGCTGCAGGGCATTTGGGTACCCAGCTCCCAACATCCAGTGGCACCAGTGCTTAGGAATGAAATCCACGTGCAAAGAGAATGACACTGCTACTTTGGAGCATCTCCAAGCAGACACAACTGTTTCAAACCAAGAGCCCTATGGAGATGTTGAAGTGCTGAGCACAGTGAACGTGGGCCCCTTCTCTGAGAGGATGACCGTGGAGTGTGTGGCTTTTAACATCGCAGGGGAGGATCGGGTTTCACTGCAGACCGATGTTTTACAtacacctttcttcacaaagaCTCTTGTGGGATCATTGTGTGTGGCTGGCCTTTTCCTGGTGCTTCTGGTGATCCTGTTGTACAAGTACAAGCAGGTTCCACTTGTGATGAACCCGAAGGAGATACCTGGCCACTGGATATGGATGACTTGCTTAAATTCTCCTACCAAGTTGCTCAAGGGCTTTCTTTCCTTGCTGCCAAAAATgtACACAATCATGAAGATGTGTTGGAATTTGGAACCAACCGAGCGGCCAACTTTCGATAAAATAGGCCAACTCATTCAGAGACTACTGGGTGAGCAAACAGAGCAGATTTATAAAAACGTGGGGTACAGTGGAATGGAAGAAGAGGCGGAAACCTGCGATGCCCCTAAATGCCAAGAAGAGTCATGTGACCAGGGAGAGGATGTCCAGCCACTGATGAAAACTAATAACTACCAATTCTGCTGATAGCCATCTGACCATTTTTGCCTATTTTTATCTTATGCCTTTCATATAATGGTTCCAAGCTGCTCTCTTGAGAGTGCCCTTTCACAATAGATAAGCTTTCATTGACAATGTTGAAATCCATTACATTACTACAACAACTGGTGGATCGGTTAATTACAGTTCAGCTGGCAGACAGAGATAAAAGTACTGATGCGTCTCACTAGTTAGATTTCATTTTCGGTTCTAAATGACAAGGGTtcaatacagaaacaaacccgggttccttattttaaaatatcttcccCTGTCTTTTTTGAATTAACATCAAAACTGAAAGTGTCTCACCCTTTTCTTTATCCAATTGAAGAACAATCTTAAAATGGGTCTTCAGCCTGCCATACTGTATTCATTGTATTGTGTCATATCTAATGAACGGGCTCAGAAACTAGTGACCAAACTGGGCTTTCTCTGCTATGAAGGTGCTCCTTGTTAGATTGATGCAGCTATTTTATGTCAACCCTTTCAGCAGCTGAGAAAACATAAGGTAACTATTTTCAGTAAGCTAATGAACCAagtcagcattttattttcttggggGGGAAATGAAAGTCAGATTGCTTGTATTTTCAACAAGCACTGCAGTTTTTAGAACCCACTTTCCCAGGTAATTGCGCAGCTGAACAAAAACAGTACgtcttgtttatattttttcttttcatatgcggtcacatttattttcttaagagATGCCTAAATAAAgtcatttgtctttttgtttatgaaagtatgttttgatgttttaagGTTTCCAAATACAATCTTTCATTGGTATAACACAGGAGTAGAGGAAGTATACATACTTATATactcatattttaatatatattaaagacaTCATTGAACCCTCAGTCCATTTACTTAACctgaatgtttatatatatatatatatatatatatatataacttttaacTGATATAAACATGAAGCAAAAATCATCTGAGATTTATCAAAACATTCTAGTGACAAAATAATTGCAGAATACTTTGGCTTATGACATGCTATGAGTGTATTGCACTTAATATAGAATGGATAAAAGCATTTCACTACTTTAAGTTTctgattacttaaaataatgctTGTCAGCAGTGGCATGTGTTAGTCCTGATCCCAAGACTTATCTTCCTGCTGCCAGTCTTTTCAGACAGAATGTCAAGTGGAAAATAAGTGGCCtgtattatttatctgtattttccatatagaaaaaaaaataagcttgCCGGGGAAGCTTTGAACATTTATTGATCTAAAGAGTTTATATGAGTGAGTAATGTAATGCATGCcgtcatttaaaatgatttaaaacagtGATATATTTAAGGATACAGTACTTGTTGGTTGGTACAAGTATATTTTGGCTTATGACTCCATCTGGCTTATTTCTTACTGTCTCATTTAAAATCCTtcgaaaatgtaattttattagCAAAAGTTGCAAATAcctttgatgatgatgaaagACGAAATGGGCTAATCAGAACAAAATCACATAATATCTGAAGGTTGCTCTTTATATTATTGGaaatttatgtttatatatgtaaatgttttttttttaaatacatacattttcttcgcagttaaaattatttttaaagtcaatAATCTTTATACCAAGCTATTTCAGAGACCGTAACTTCCTTTTTATAACTgttgtacattatttattctgttttgtacttttcatggctgtgttttgtcattgaaataataatagtaataatattcataataataaaagtataccATATACTTGGCTTTATTAAgaacaattaatgtattttttccagtggaaaagaaaaaacaacatgaccacataattaaattgcaatttacaTTTGACAGTCATAATACCCTATTGGTCACAATTTAGAAAAAGCTTGGGTTAAGAAAGCTTTACTCATCAACCTTTTAGTCCacagaatgaaaacataaataaaacatgatttataatttacttgTTGCACTCATTTCAGAGAGTTGATCTGTATCACTACAGTctgcaaacaaatgcataacacatggaaaaaaacatctgcagctTATTTTCTTTCATCATTCACCATAAATCAAACAGCTTATGATAAATGTCTTACAATTTCAACATCATTCATCCTTCAGCAttagaattttattttacagatctTCCTCATGTAGCATTCAGCATATACTGCCAGATATATTTGATGAGAAGAGAAAAAGATTgtgtaaaataagataaaatagcATGGCTGTATGTTCATAACCAAGACAAGGAATGtgataaatgttaaatgtatttataaagttatctcagaatttaaacatttatcaatgttaattaaaatcctACAGAGAATTTTATTCACAGAATAACAGTTGCTTTAACTCCACACTCACAGTGTGAGTGATTATACAGGGCGTCTTTAACTATGTCTGCATGACATCAGAGAGAAGTTATGCAGAAGTTAATTTTTATTGTGTTAGCTTTTGTTATTCTTATCTTTACAATTGTTGATGTTTATGTTACTGTTATTGCACAGTGTATCTTTAACTatcattcaaatgcaaaacactGTGAAAATGTGGGATTTCCTTCTAATAGATTGTTGACTTACATGCACTGTTGAATGACAGGTTTTGATTGGGATATATATCTTTTACATTCAGCATGACCTTTTCAGggcatttaaatgaatgcttagttttgtgtttgtgtatgtaaaccattttaaccttttatatgtatatatgccaTTTTACTAATAAACTAGCTTTTGACGTGGATACAATATGTTATCTAagaatttatttgtattgatatacAGTCCATTATACAATTATTCTGTCCAGAATACAAACCCAAATATTTCTTTTATGAATTATATCTCAcataattaaatagttttgaCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132569 lncRNA downstream 37347 19422435 ~ 19480084 (-) False G105968
TU132567 lncRNA downstream 48067 19396793 ~ 19469364 (-) True G105968
TU132642 lncRNA upstream 48535 19588175 ~ 19588972 (-) True G106023
TU132842 lncRNA upstream 401389 19941029 ~ 20014274 (-) True G106163
TU132867 lncRNA upstream 531842 20071482 ~ 20115868 (-) True G106183
TU132868 lncRNA upstream 531842 20071482 ~ 20086764 (-) False G106183
TU132869 lncRNA upstream 531842 20071482 ~ 20095242 (-) False G106183
AMCG00011349 mRNA downstream 4111 19499360 ~ 19513320 (-) True AMCG00011349
AMCG00011345 mRNA downstream 73280 19438223 ~ 19444151 (-) True AMCG00011345
AMCG00011335 mRNA downstream 195392 19313827 ~ 19322039 (-) True AMCG00011335
AMCG00011336 mRNA downstream 209723 19296084 ~ 19307708 (-) True AMCG00011336
AMCG00011332 mRNA downstream 255479 19247624 ~ 19261952 (-) True AMCG00011332
AMCG00011350 mRNA upstream 10587 19550227 ~ 19570328 (-) True AMCG00011350
AMCG00011355 mRNA upstream 181514 19721154 ~ 19726365 (-) True AMCG00011355
AMCG00011357 mRNA upstream 190852 19730492 ~ 19759043 (-) True AMCG00011357
AMCG00011354 mRNA upstream 277827 19817467 ~ 19824152 (-) True AMCG00011354
AMCG00011356 mRNA upstream 326479 19866119 ~ 19867813 (-) False AMCG00011356
TU132572 other downstream 104416 19410368 ~ 19413015 (-) False G105970
TU132457 other downstream 412162 19102293 ~ 19105269 (-) True G105890
TU132382 other downstream 1326236 18184484 ~ 18191195 (-) True AMCG00011316
TU132383 other downstream 1326236 18184484 ~ 18191195 (-) False AMCG00011316
TU132338 other downstream 1516986 17999668 ~ 18000445 (-) True G105793
TU132729 other upstream 325974 19865614 ~ 19867902 (-) True AMCG00011356
TU133362 other upstream 3513676 23053316 ~ 23060966 (-) True AMCG00011409
TU133710 other upstream 5472565 25012205 ~ 25018332 (-) True AMCG00011445
TU134083 other upstream 6967303 26506943 ~ 26516507 (-) True AMCG00011485
TU134703 other upstream 10085444 29625084 ~ 29625387 (-) True G107713

Expression Profile