RNA id: AMCG00011349


Basic Information

Item Value
RNA id AMCG00011349
length 3969
RNA type mRNA
GC content 0.39
exon number 8
gene id AMCG00011349
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 19499360 ~ 19513320 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCCCTTTTTATCTTCGGCTTCTTCTTATCAGTGAACAGACAGAAAAGCAATTTTGGATATGAGCCTGACCAGGATTATTACCACGACATGGAAGAAACACAGAGACAGTGGGAGACAGTGTCCACTATTGAAGAGCTGTTGGACCTCATGTCCCCCGAGTATAGCCTGGTCCAACACTGCCTACGGAAGAAGGCACTGAAGGGGCCCAAGACAAAGGAAGAGGACATTTGGAGAAATCCTAGAGAGGCAGCCTTCCACACGTTTGAGGATTCATTGCACCTTATCATAAAGGAGATGCAGAAGACCGGCTGCAGGCCAAGAGAAGTGCTTCTAGATGTCTCCAAGGAATACCCTGAAAGTACAAACACGTTTTACATGcctcactgtgtctctgtgtatcgCTGTGGGGGCTGCTGTAACAATGAGGCCTTCCACTGTGTCAACACAAGTCACACTTACATCAACAAGACCtTGGTCGAGATGTACATGCCACAGACCTCATCATCAGTGATCGTGGTCAACTTCATCAACCACACAGCCTGTGAATGCCAAACTAAGCGACCGATTCACTCCATCATCAGGAGGTCGGCAGCCACTGGCCATGCTAAATGCGCTGCGACCGAAACTCAATGTGCTGCTGGGCTGTTAAGGAGCCCTGTCACCTGCCAGTGTGAGCCCGATGACATCAGCCGGGGGCCTCTGACCGAATACGACCCCCTGGCTGGTGCGCTGTCTGACTTCTGCGGTCCGAACAAAGTGTGGGACGAGGAGCACTGCGAATGCGTGTGCTACAATGGGCTGACCCACTCCGCCTGCGGGGAAGGCCGGAGACTCGACGGCGCTACCTGCGAGTGCGTGTGTGCGGAGCAGGTGGCACCCGAGTTCTGTCCACCCAAGCAGAAGTGGGACGAGGAGCTCTGTGGGTGCGTTTGCACGGCAGACTGCCCAAAGAATCAACCTCTGAATCCGGAGAACTGTCAGTGCGAGTGCAAGGAGAGTCTGGCCACCTGTATGATGCAAGGGAAGAAGTTCAACCCTGAAACCTGCAGctgTTACCGGTTCCCCTGTCGGACTCAAAGAAAATGCACATCTGGATATTATTACAGCCACTACGTCTGTCAGTGCTTACCAAATTTCATGAAGTCAGAGGAGAGGTACTGAAAAGAATAGTCACTGGAAGTTCAAACTGAAGAATCTCACAGACAGCTGGCTAGAAAGGAACAAAGACTGGAGAACAGTGTACAGATGTTCTTAATACAGATACTATACTGTAAATGAGAAAACCTGTTTCTATTTGCTCAGTAGTGAGACATCtgcataattcataattcataatttatctTGAGGTGGAAGCTCAAAGAACATTTTAGtttactgaagaaaaatattcaTATCTGCGTTACTTGTGCTCCCAAACTGCATTGCCATGATCCATATGCTTTCCTGAAATGTGAGGCATTCCTTATATATTCAGAGCATTTATCaatttatgttatatataaaagtgaAGATCCTTAAGCATGCTGTCTTATGCGGGTATTGCGAGATCATGTTTAAGCAGCcagaaaatatttgcaaaaacacaataatatattttagtagATAAAAATACAGCAGAGGGTTTAacacatacagtatgtttttcctttttaaaaaatgaacgcCAGTAGAATTAATGTCACAAGTGAAATACAACCCCCAAGGCTATACACGTGGTATTGAAGCAGATTGTCAAATTAGAACCCATACATTTGCAATTCTGTAAAATTGTGTAACCGCGTTTAAACAATAAACAGCTGAAATTATGAGTGAATGAGATAAGTGTTATGGCTTTAAAGACATAAGGTAGCTCAATAACTATTGtttacaaaattatttgaaactatttgaaataatttaaaggtaTTGTCGCTTTATCAAATAGCACGGCTAAACCCATGCTAATAAAGGAAGTTGCACATTTACTATTAATCCAGATATAATTTTaacaagaatattaaaaaagtaatttaaccAAATTTTCTTTTGGAGTTGTTGAATCCTGAGTGTTAATTCTAGCCactcacatttctttaaatctctgcattaacaatacaaaatagctAATAAGCCAAAGTGTTAAGTTTCAGCTGTAATTTGAGTCCTCCAATCTCTATTGAAACGATCGGTGATATGAATTATAATTAAtccatattttttacattatgaCAGGGTGTATGTGCGGgtcacaaaaatgcaaaaagggtgtatatttatacattcatagGCTATATCCACATGCAGTGAACATAAGTTAGACCATAGATAATCTCAGGtaaggtattttttaaataagggaCAAACAGCTATCTGAATAACattagcacattttattttataagcagctgctattttttaaataaaatgcaaatttccaTGTGTATATACTTGCATATTTCTGTTCAAAAGCATcctttgtaaattgttttatttttgatatcttATGCTGTACAGGTACtcttgatttgtgtttgtctcCATGTATCTGAGAGAAGTTAGAGTatgttaaattacaaataaaggaAGAACAAGTGATTATCCACTAACACGAATACCATAGTTAAAACACTTACCTTTTGTTGGATTGTTTCTGTTGTTCCTCACCATTTGACAGCTATTTTGGATTGTAATTGAGAAGGAATTACTTGGGGTCTGATGTTCCATTGTGTGCAAATCACCTCCCTCATTAATTTACTGCAGAGAGGGCAGTTTACCCACAGTGGAAAATAAGGGCTTTTGTGTACAAAGCTGTGAAATTTAAGGCTACAAAgattgtaaaacatatttgtattttatatatgtaattcaCTGTTgactatatataaaatgtttattaagtTTATTAGTTATTTGTATATTCTTGGTTGAATACCTATTtgctttctatttaaaatataaatgttgatgTCGAAAGCATAGTATGGaatgtgttttgtaattttcatggttttgtttcattacCCCTACACAAAAGACACGGTCATCTCAGTACAATTCATTTGGAGGCCGACATCATCCTTCAGGACGTTGAGTTTAGTCTATAGTGTGATATCAGCACACGGGAGCCAGATGTAAACCAGAGATCCTGTATCTCAGTGCTGTTCTCACAAGGTCTAATAAAACAGTTTAGCAGAGACTATTTCCatcaaagaacagaaaacattcaTAGAGACACAGCTATCTACATTTTTAACCTTCTCTCATTTTCTCTGACATATTATTCAAGTAAATAACAGCTATGCATTTAGGAGAAATGTGATACATAACTTCATATCCTTGGAATGTTTATCCACAAGAAAATCAAAAGGATTGCATTTTTCCTATACAGAACTCCAATGTAATCCGAACACCTGCGCACAAGCTGTATATGTGCCCGTTTGAAGCAATGTTGaggtttagtattttgtttagaAAACTAGAGAGAACCATTTTATATCCAGTGTGTGTTCATGATAGTTTGAAACAAGCAACTTATGTGACGTccatttgtaatttttcattgcttcacattttaaagcaagtcacatcaacaaaacacaacacgtgTAAATCAATTTCGGCAGATTAACAAATCGTGTTCAATAAATAAAGGACCTTGTAGAAGTAGactaaacatacatttctgaagTAACACTATAGCCATCTTGCTGCATATTCCATAACAGGAAATACTTTGTGTAAACCTGTAACTAAGGCAGAGAAACTGACAAGTTGTCTGGATAACTGCTCTGAAAAGGGATGTCGTTATCCAGACTCTGTAAATGTAAGCTTTCACAATACTATGGTATTACTTTTCACAGGACAGGCTGTTTACTACTGCCATCCATGCACAGAAaacttatttgtgtgtgtgtgcatccaGAGTCTACCACAGTGCAGTGCTGCCTTCTGTTTCTACATGAtcagaaattataaattaaatatttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132569 lncRNA downstream 19276 19422435 ~ 19480084 (-) False G105968
TU132567 lncRNA downstream 29996 19396793 ~ 19469364 (-) True G105968
TU132566 lncRNA downstream 71413 19422435 ~ 19427947 (-) False G105968
TU132579 lncRNA downstream 86345 19410368 ~ 19413015 (-) False G105970
TU132578 lncRNA downstream 86345 19410599 ~ 19413015 (-) True G105970
TU132642 lncRNA upstream 74855 19588175 ~ 19588972 (-) True G106023
TU132842 lncRNA upstream 427709 19941029 ~ 20014274 (-) True G106163
TU132867 lncRNA upstream 558162 20071482 ~ 20115868 (-) True G106183
TU132868 lncRNA upstream 558162 20071482 ~ 20086764 (-) False G106183
TU132869 lncRNA upstream 558162 20071482 ~ 20095242 (-) False G106183
AMCG00011345 mRNA downstream 55209 19438223 ~ 19444151 (-) True AMCG00011345
AMCG00011335 mRNA downstream 177321 19313827 ~ 19322039 (-) True AMCG00011335
AMCG00011336 mRNA downstream 191652 19296084 ~ 19307708 (-) True AMCG00011336
AMCG00011332 mRNA downstream 237408 19247624 ~ 19261952 (-) True AMCG00011332
AMCG00011333 mRNA downstream 281521 19209822 ~ 19217839 (-) True AMCG00011333
AMCG00011348 mRNA upstream 4111 19517431 ~ 19539640 (-) True AMCG00011348
AMCG00011350 mRNA upstream 36907 19550227 ~ 19570328 (-) True AMCG00011350
AMCG00011355 mRNA upstream 207834 19721154 ~ 19726365 (-) True AMCG00011355
AMCG00011357 mRNA upstream 217172 19730492 ~ 19759043 (-) True AMCG00011357
AMCG00011354 mRNA upstream 304147 19817467 ~ 19824152 (-) True AMCG00011354
TU132572 other downstream 86345 19410368 ~ 19413015 (-) False G105970
TU132457 other downstream 394091 19102293 ~ 19105269 (-) True G105890
TU132382 other downstream 1308165 18184484 ~ 18191195 (-) True AMCG00011316
TU132383 other downstream 1308165 18184484 ~ 18191195 (-) False AMCG00011316
TU132338 other downstream 1498915 17999668 ~ 18000445 (-) True G105793
TU132729 other upstream 352294 19865614 ~ 19867902 (-) True AMCG00011356
TU133362 other upstream 3539996 23053316 ~ 23060966 (-) True AMCG00011409
TU133710 other upstream 5498885 25012205 ~ 25018332 (-) True AMCG00011445
TU134083 other upstream 6993623 26506943 ~ 26516507 (-) True AMCG00011485
TU134703 other upstream 10111764 29625084 ~ 29625387 (-) True G107713

Expression Profile