RNA id: AMCG00011350


Basic Information

Item Value
RNA id AMCG00011350
length 5741
RNA type mRNA
GC content 0.38
exon number 17
gene id AMCG00011350
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 19550227 ~ 19570328 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACAACATTAGAaattgcatgcatgtatgtatttgtcatCACTCGTCTACCTTTGTGGGAGATGTGTTGTAACAGACTGTGAATTTGCTTTGTAAGCACTCCTACAGCTGTGTCCAGGAAGCTTCGGACTTCACATTTCCCCCAACAACTCAGAGATCGTACTGCAGCCAAACTCCAGCACCTCCCTCACGTGTTCTGGGTTGAGTCCTGTATGGGATTACGAAGATATAAAGGATGTTCAAGTGCACAATGACAATTCTTCCAGTACCCTCATTCTGAGAAACATGTCGTGGAGACACACGGGATCATACACATGCTTTGAAGAAGGCATAGAAAACATAGAGAAAAGTATCTACATTTTTGTTCCAGATCCAGATGTGTGGTTTCTCCAGAGTGAAACATTAGTGATGAAGACACGGAAGGAAGGTGTAATTCCATGTTTGGTTACCAACCCTCAGATTAATGTCACCTTATATGAGAAGTCAACTGACATTCCTGTCAGTGGAAAATACAGTCCACAGGAAGGCTTTAGAGGGGATTTGCAGGATGCGACATACCTTTGCAAGGGAACTCTGAATGGCGAGGAAAGGGAATCACACTCATTTTATGTTTATAACCTTCAAGTAGTACCAGGAGAGTTTACTGTCCAAGTCAATGCCTCAAGGATGTTCTTAAAACAAGGTGACCCTCTCATTGTGAACTGTACAGTCAATGGAGTGGAGCTAGCTTATTTCACATGGGAATACCCAAGCAAAGATGTGGGTAAAATACTAGAACCAATAACAGATATCAGTTCTGAAGAGAAGTTGGAAATGCGATCCATCCTGAACATTACTAGTGTCACCCTTGAAGACGCAGGCCAGTATGTCTGCCGTGTCGTTGAACATATAGAGGAAAACAACGCTGTAGATAACATCACAATTACAGTGGTTGAGGTGGGTTTTGTGAAGCTGAATTCTTCCTTCAAAAGCACCTTGTCTAGTAAACTCCACGAAACCTTTGAGCTGACTGCGCAAATTGAAGCTTACCCCAGACCTCAGATACGGTGGCTGAAGGACAATGTCACCCTCGCAGCGGACCCAGAGGGGGTGTTTATTGAAACGACAAGGACGGACGAAATCAGCTACCTCAGTACTTTGACTTTGGTACGAATTAGAATGGAGCAACAAGGCCTTTACACAATTCAAGTTGCTAATGAAGACGATGCCAAGGAATTGTCCTTTGAATTTAATGTGAATGTGCCCCCTCAGATAGTGGAACTCTCCGACGACCAGCTAAAAGAGAAAGGACATGCAGTGGTGTGCGTGGCTGACGGTGTGCCTCCCCCCACAATTCAGTGGTACAGCTGTGATGATACAAACAAATGTTACAATAAAACTGCAGGGTGGAGACCTTTATCTAAGGACCCAAATAATATCAGCATACAGACCAACGACAGCTACAATGAGACTCGTGGAGTTTACCTCGTCAGGAGCATGGTCATCTTTCAGAAGCTGGAGAAGATCATTTCAGTTCGCTGCCAGGCCAGGAATGACTTTGGGTGGCAAGCGCGTGACATCAGATTGGTTTCACAACTAGCTACTCATGcGCTCAAATCCCAGAAACCACGCTATGAAATCCGCTGGAAGGTGATCGAGTCCGTCAGCTCAGATGGGCACGAGTACATCTATGTTGACCCCATGCACCTGCCTTATGATGCTGCCTGGGAGGTCCCTCGAGACTCCCTTGTTTTAGGTCCTATCTATCTCATAACAGAGTATTGTCGGTATGGAGACTTGGTTGACTACCTCCACAGAAATAAGCACACCTTCCTGCAGTACTATGCAGACAAAACCAGGAGAGATGCTGAGATGTGGTCAAGTAATACATCTGAAGGAGAAGGGAAAAGCTACGTGACTCTGACCTGTGATAGTGATGGGGGGTACATGGATATGAGCAAGGATGATACGGTGGAGTACGTCCCCATGCTGGAACTGACTGATAACATCAAGTATGCAGATATTGAGCCATCCGTATATGAAACGCCTTACCAGGAAGACAACTACCAAGGACAAGGTCCTGAGAGAACAGACACCACTCTGGTGATCAACGACTCCCCCCTTCTGAGCTACACAGACCTGGTGGGGATCAGCTATCAGGTGGCCAAGGGGATGGAGTTTCTGGCATCCAAAAATGTAGGAGGAACGCCATATCCTGATCTTCCCATGAATGATCTTTTCTACAATGCCCTGAAGCGGGGCTACAGAATGTCAAAACCTACTCATGCAGCCGATGAAATCTATGAGGTTATGCAAAAATGCTGGGATGAAAAATATGAGACGAGACCTGAGTTCTCATATTTGGTTCATACCTTGGGGAACATGTTGACTGACAGCTACAAAAAGAAATACATCCAGGTGAATGAAAGCTTCTTCAAGAGTGACCACCCTGCGGTTGTGCGCACAAAACCTCGAATCTCTGGGAGTCCGGTCTCTCTGTTGCACTCCGATCTGGAGGCGAGGCAGGATGCTGTAGGACAAGAAGCCCCAGCCTCCGATAATGAATACATCATCCCCATTCCCGACCCCAAACCAGAGGAAGATTTGGAAGAAAACGGAGACACTGAGGCCAGAAATACCACGAGCTCTCAGGACCCAAAAGAGATGGATGCAGTTTCTGTCTCTGCTGAGACATCAGTCACAGACCccgagaaaacaaacacaagttcATCCCAAGAAGAGGAAAAGACAGAGCCCGAGGTAGAAGACAGTTTCCTGTAACATGAAAACTTTTTTAGAAATAAGTGTGAAATAACTTCCAACAGTTAGATACAAGGCGGTATACCTGGTGTCAGATCTCATCACCTACTACATTGCACTTTTCAAACATCAAAAGACAGTTACAGAAGCTGATCTCATTTTTACCTCTAAAACCGACCATGTATgctattttatatgaaaatatcatttattttcattgtatttttctgccTGTTAATGTttcatctttgaaaatatttgaaaaaaaatatgcttttggAAAAATGGATGAAGTATGAAtgtatttgcagttttattttgccTGCTTAACCTGTTCAACAATATTTcagataaaaataattcaagtGTATAAGGACAGGCCACTACGTACAGCTACGGCTAAAAACTCATCAGATACATATTGTTAATATTCATTTACTAGATTATCCAGCAGTAACTATTCAGCCGATCATTAGCACTGCAAACCAACTGCTTATTGCATctatataattaaacatgtctaccataatatatattacaaaaactacaaacctaAGGGTATGAGATATTTTTATTacgtttttaatttgtatttgttgtagaTTTTCTGATGCTTTATGCAATCCCTGTCAAAATGACAATATGCAATGACATGGACATGATTTTCTCTTTCTAGTAACATCACCAAGGTACTGTGAGGTACAACACATTATTTGTAGTAgcattgacagattttatttttattattattgtttttgtctaGTATAAATGGGCTTACACTAACATAGTTTCAtcaatgaatatgtattttgcaaACAATTATCCTACTGCATTGCTGTGTCACTACCCAACAATCTTACATTACTATCATATTTTTAGGTCATAAACATAGTAACATAACTAGCATAAGATAAAGCTAAATATTAGTCAATTGCATagattttacatatatacatgttatattaacttttaaaacttacatttacctttttctataaaagggacattttttttattgtcaagttacatgaaaagaacaaaaaataaaggttcTAGAATTCAGAATTTGAACAACTGCATAATATGCACACTGAAGTctaatatgaagaaaaaacctaaatatgaaatactactaaaaagaaacaaactcttTGTAGCAAATTTGCACTTTAAAAATTCTTGCCAGAGGATTCTTGTGGAAAGAAAAACTTCATGATCAAATCTTCATCAGTGTTTAAACTATATttgatgtctgtgtgtatacatacacacacaatattttgcaatgagtatgtgtgtttttataatggATTTAAGATAGGTACTTAAAAAGTGATTAATCTGAAATCACTTCAAACTTCTACATTATACATTGTGTCCACGTTTAAGCCTTTGTTGagtcttttttgttgttctcaACTCGTCTTCCAAGGtacaacataatataaaatacacgaCTACAGGTGATAATctgcatgcattgttttttttttactcgcTGTTTAAAGAGGCTGCGGATTTCTCATCTCAACTCAACCGTAACCAGTACATCATGACCCTCACAAGATGATCGCTATGAAATCAATTTCCAATCAAAATTATAAATGCCATAATTGTTTTTCCAAATATATTGAAGAAGGCTTTATAGAGATCTATTGGCTCAACAGGCTATTTCTGTTTAAACTAACATATATTTGAGACATATATagaattaattttcttttcaatttcacagtttttcaGGGAACCTTTATACCATGTGCATTTCGTCAAGGATTGTACTGAGTTGTTGATATTTTAgactgtaaaatgttaaattattatggAATGTATCGACAAACTGATGACCAGTTGTTATGTTAATGACTAATTGTTGTTGTAATCATTTCTCAGCTCTGCATTCAATATGCACACATTCCATTTAATAAACCCATAATTGTGAAAGTCTTCCACAGATTGATGAGAATTTAGAATCAGGTTATGTCTGGCTCTGCTTACAGTTTCAAATAATAGCAGTATAACTGAGAATTATAGGTATATATTTGCTTAACtatgattgttttgtattttattttttggaaggggggtggtacatttttattttcttctttgattAACTGGGACATTGATCAGCCAATGTACACTTCACTTCTGTCAGGAATGGCTCAAGGAATATTTTTcaggaaatatttttaaatagctggagaaaatgtgaacaatACATGTCTTTATGCAGAACCAACTAACTACGCAAAACAAATGTGGTCTGTGACTCAAAATATTAATCATAGAGTCTAGAACAGCAACTCAAATTGATTGGACACTATTTTAAAAATTCAAGAGGAACTGAGGCGTCTCCTTCTTTCCCCGTTTACTCTCTGAACACCAGTGTATTACGAATATCTGTCTGTAAATGTAACTTCTCCAAACCTTTTCTCCAAAGTCGCATACCACAAACCACCAAAATCTCTTGAAAGtccataataaaacaatattccttaaaatgttttcattttttctgggATAATTTTGATCTCTCTTTTGCACTCATGTAAGAAGTACacctatacattaaaaaaggagaGTGTTTTTGTCTCTGTTACACTGTGTTGTTTCTTGATTTTACAATTAACCTTATCTGCTTTTTTAAGTGGGAAGTGAGAACTGGGATTAAAGTGAGATTAAAGGCTCTGAAGTCCTTGTTTATGActtcaaaatcattaattaGACTAAAATCCATCTGAgccattttcttaaaatgtttcactttttttaaacaatgattGTCTTCTCCAGGtacttttaatgtttgtttgttttttcatttaaactgaTGTAAAAAACCAGATACTCCATATAAAAACCATGTTCATACAGGCTGTGGTACCAAAGATGTATGTTTAGTGTGTGTATtcttatattttgcattgtacTGAGCTATAAAAGTTTGTATATTCCTGTTCAGGGCATActttataacaaataaaaatatatattagtatta

Function

GO: NA

KEGG:

id description
K05089 PDGFRB, CD140B; platelet-derived growth factor receptor beta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132569 lncRNA downstream 70143 19422435 ~ 19480084 (-) False G105968
TU132567 lncRNA downstream 80863 19396793 ~ 19469364 (-) True G105968
TU132642 lncRNA upstream 17847 19588175 ~ 19588972 (-) True G106023
TU132842 lncRNA upstream 370701 19941029 ~ 20014274 (-) True G106163
TU132867 lncRNA upstream 501154 20071482 ~ 20115868 (-) True G106183
TU132868 lncRNA upstream 501154 20071482 ~ 20086764 (-) False G106183
TU132869 lncRNA upstream 501154 20071482 ~ 20095242 (-) False G106183
AMCG00011348 mRNA downstream 10587 19517431 ~ 19539640 (-) True AMCG00011348
AMCG00011349 mRNA downstream 36907 19499360 ~ 19513320 (-) True AMCG00011349
AMCG00011345 mRNA downstream 106076 19438223 ~ 19444151 (-) True AMCG00011345
AMCG00011335 mRNA downstream 228188 19313827 ~ 19322039 (-) True AMCG00011335
AMCG00011336 mRNA downstream 242519 19296084 ~ 19307708 (-) True AMCG00011336
AMCG00011355 mRNA upstream 150826 19721154 ~ 19726365 (-) True AMCG00011355
AMCG00011357 mRNA upstream 160164 19730492 ~ 19759043 (-) True AMCG00011357
AMCG00011354 mRNA upstream 247139 19817467 ~ 19824152 (-) True AMCG00011354
AMCG00011356 mRNA upstream 295791 19866119 ~ 19867813 (-) False AMCG00011356
AMCG00011362 mRNA upstream 339614 19909942 ~ 19912905 (-) True AMCG00011362
TU132572 other downstream 137212 19410368 ~ 19413015 (-) False G105970
TU132457 other downstream 444958 19102293 ~ 19105269 (-) True G105890
TU132382 other downstream 1359032 18184484 ~ 18191195 (-) True AMCG00011316
TU132383 other downstream 1359032 18184484 ~ 18191195 (-) False AMCG00011316
TU132338 other downstream 1549782 17999668 ~ 18000445 (-) True G105793
TU132729 other upstream 295286 19865614 ~ 19867902 (-) True AMCG00011356
TU133362 other upstream 3482988 23053316 ~ 23060966 (-) True AMCG00011409
TU133710 other upstream 5441877 25012205 ~ 25018332 (-) True AMCG00011445
TU134083 other upstream 6936615 26506943 ~ 26516507 (-) True AMCG00011485
TU134703 other upstream 10054756 29625084 ~ 29625387 (-) True G107713

Expression Profile