RNA id: AMCG00011355


Basic Information

Item Value
RNA id AMCG00011355
length 1125
RNA type mRNA
GC content 0.44
exon number 4
gene id AMCG00011355
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 19721154 ~ 19726365 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

actACAAAAGAAAGTGTGATAGTAACCAGAAATCACGCAGAGTCTGTGCGTCTTTCCCTGCCGGGCGTCCCAGTGATTAATACTAGTAGAGATGTGTCCTGGAGCTTTAAAGACACCAGAGttgtaaagttaaaaaatgGTGCCATTACATTCTATGGACAGTATGAGAAGAGAGCAGCTCTGTTCCCAAATGGGACGCTGATGTTGAAGGAGCCCATGAGAAATGACAGTGGATCTTATAAACTAGAGGTTTTTAAAGATGGAAAATGTGTGATGACAGGGAGCATCTGGCTTGAATTACAAGATCCAGTCTCTGAGCCAGACGTGCAATACTCCTGTACAAGTGATGGGATTGTAGAACTGAACTGTACCGTGGACAGAGGAGACAATGTGTCTTTCAAATGGAGTTTATTCAATGGAAGTCAGTCCAGCAGCCTTGGATTCATTGCTGGATGGAAAGCTGTCCTCTCTGTGGGACAAAATGTCTCTGGGGAGTTTGTCTGCACTGTGGAGAACAACGTCAGCACAGAGATAAGCAAACCTCTGAAACCTTTTTGTAacataactACAAAAGAAAGTGTGATAGTAACCAGAAATCACGCAGAGTCTGTGCGTCTTTCCCTGCCGGGCGTCCCAGTGATTAATACTAGTAGAGATGTGTCCTGGAGCTTTAAAGACACCAGAGttgtaaagttaaaaaatgGTGCCATTACATTCTATGGACAGTATGAGAAGAGAGCAGCTCTGTTCCCAAATGGGACGTTGATGTTGAAGAAGCCCATGAGAAATGACAGTGGATCTTATAAACTAGAAGCGTTTGATGATGGAAAATCTGTGATTGCAGGGAGCATCTGGCTTGATGTACAAGATCCAGTCTCTGAGCCCAATGTGAAATTCTCCTGTAAAACTGATGGGATTGTGGAACTGAACTGTACAGTGGACAGAGGAGACAATGTGTCTTTCAAATGGAGATTAGTCAATGGAAGTCAGTCCAGCAGACTTGGATTCATTGCTGGATGGAAAGCTGTCCTCTCTGTGGGACAAAACATCTCTGGGGAGTTTGTCTGCACTGTGGAGAACAACGTCAGCACAGAGATAAGCAAACCTCTGAAACCTTTTTGTAaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132642 lncRNA downstream 132182 19588175 ~ 19588972 (-) True G106023
TU132569 lncRNA downstream 241070 19422435 ~ 19480084 (-) False G105968
TU132567 lncRNA downstream 251790 19396793 ~ 19469364 (-) True G105968
TU132842 lncRNA upstream 214664 19941029 ~ 20014274 (-) True G106163
TU132867 lncRNA upstream 345117 20071482 ~ 20115868 (-) True G106183
TU132868 lncRNA upstream 345117 20071482 ~ 20086764 (-) False G106183
TU132869 lncRNA upstream 345117 20071482 ~ 20095242 (-) False G106183
TU132870 lncRNA upstream 345117 20071482 ~ 20112210 (-) False G106183
AMCG00011350 mRNA downstream 150826 19550227 ~ 19570328 (-) True AMCG00011350
AMCG00011348 mRNA downstream 181514 19517431 ~ 19539640 (-) True AMCG00011348
AMCG00011349 mRNA downstream 207834 19499360 ~ 19513320 (-) True AMCG00011349
AMCG00011345 mRNA downstream 277003 19438223 ~ 19444151 (-) True AMCG00011345
AMCG00011335 mRNA downstream 399115 19313827 ~ 19322039 (-) True AMCG00011335
AMCG00011357 mRNA upstream 4127 19730492 ~ 19759043 (-) True AMCG00011357
AMCG00011354 mRNA upstream 91102 19817467 ~ 19824152 (-) True AMCG00011354
AMCG00011356 mRNA upstream 139754 19866119 ~ 19867813 (-) False AMCG00011356
AMCG00011362 mRNA upstream 183577 19909942 ~ 19912905 (-) True AMCG00011362
AMCG00011366 mRNA upstream 650577 20376942 ~ 20384649 (-) True AMCG00011366
TU132572 other downstream 308139 19410368 ~ 19413015 (-) False G105970
TU132457 other downstream 615885 19102293 ~ 19105269 (-) True G105890
TU132382 other downstream 1529959 18184484 ~ 18191195 (-) True AMCG00011316
TU132383 other downstream 1529959 18184484 ~ 18191195 (-) False AMCG00011316
TU132338 other downstream 1720709 17999668 ~ 18000445 (-) True G105793
TU132729 other upstream 139249 19865614 ~ 19867902 (-) True AMCG00011356
TU133362 other upstream 3326951 23053316 ~ 23060966 (-) True AMCG00011409
TU133710 other upstream 5285840 25012205 ~ 25018332 (-) True AMCG00011445
TU134083 other upstream 6780578 26506943 ~ 26516507 (-) True AMCG00011485
TU134703 other upstream 9898719 29625084 ~ 29625387 (-) True G107713

Expression Profile