RNA id: TU132729


Basic Information

Item Value
RNA id TU132729
length 897
RNA type TUCP
GC content 0.43
exon number 3
gene id AMCG00011356
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 19865614 ~ 19867902 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCCAGCCGGAGATCGCCGTTGGTTTATAACCGTTCTGACCCAAAGCTAGTGGGCGGGATCATAGAGCTGCAGAATTAAAGGTGAACATCATGGCTGCTGCAGCGGTGAGAAGCGTCGGGTCAAATCTCGCTAAAAACCTCAGGGAAGTCCGCTTACATTTGTGCCAGACGTCGGCGGCTAGCCAGGGGGTTAGGGATTTCATCGAGAAGCACTATGTGACGCTAAAAAAAGCCAACCCGGAGTTTCCAATCCTCATCAGAGAGTGCTCCGGGGTGCAGCCGAAATTATGGGCCCGATATGATtttgggagagagaggagtgtcGCTCTGGATAACATGAATGCTGACCAAGTGGCCAAAGCCCTGGAGACTGTTGTTAACTCAAAACCATGAATATGTACCTCAGATCATTCAGGGGACCATCTTGGCTCAGCCCTATAATATGTGGACTTGGGGGAGTAGGGTGTAGGTGGGTTAAAGACAAAGCATCactgttcaaatgtaaaataaaaggtATTTAAATTGAAGTGAATGATCTTTATTTGTTCATgttctgtaaaacatttgtttcaggtacagttatttacatttttcacaaatggaaaacagataTTACTTAAATACCATACCCCTAAACACAGGGGAGGCGTGCAGAATACATGTGCCTCCCACCAATACAGTACAACACCCATTTTGTCAAGGTTTCAGCAAATATCAGTCCGGATGTAATGTGAAAAAGGCTATgcgtatatatttatacacaaaatgAGTGTAATCTTCCATGTTATACCCATTTCAACTTGACTAAATTAAATACTGTGGCTTTAATAACCGCTGAATAACATTGAAACACTTGCTTCTGTCCTTGGATGTTCCCATGTCACGTGATGGGATTcac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132642 lncRNA downstream 276642 19588175 ~ 19588972 (-) True G106023
TU132569 lncRNA downstream 385530 19422435 ~ 19480084 (-) False G105968
TU132567 lncRNA downstream 396250 19396793 ~ 19469364 (-) True G105968
TU132566 lncRNA downstream 437667 19422435 ~ 19427947 (-) False G105968
TU132579 lncRNA downstream 452599 19410368 ~ 19413015 (-) False G105970
TU132842 lncRNA upstream 73127 19941029 ~ 20014274 (-) True G106163
TU132867 lncRNA upstream 203580 20071482 ~ 20115868 (-) True G106183
TU132868 lncRNA upstream 203580 20071482 ~ 20086764 (-) False G106183
TU132869 lncRNA upstream 203580 20071482 ~ 20095242 (-) False G106183
TU132870 lncRNA upstream 203580 20071482 ~ 20112210 (-) False G106183
AMCG00011354 mRNA downstream 41462 19817467 ~ 19824152 (-) True AMCG00011354
AMCG00011357 mRNA downstream 106571 19730492 ~ 19759043 (-) True AMCG00011357
AMCG00011355 mRNA downstream 139249 19721154 ~ 19726365 (-) True AMCG00011355
AMCG00011350 mRNA downstream 295286 19550227 ~ 19570328 (-) True AMCG00011350
AMCG00011348 mRNA downstream 325974 19517431 ~ 19539640 (-) True AMCG00011348
AMCG00011362 mRNA upstream 42040 19909942 ~ 19912905 (-) True AMCG00011362
AMCG00011366 mRNA upstream 509040 20376942 ~ 20384649 (-) True AMCG00011366
AMCG00011367 mRNA upstream 518262 20386164 ~ 20390745 (-) True AMCG00011367
AMCG00011369 mRNA upstream 566556 20434458 ~ 20438919 (-) True AMCG00011369
AMCG00011368 mRNA upstream 572572 20440474 ~ 20477081 (-) True AMCG00011368
TU132572 other downstream 452599 19410368 ~ 19413015 (-) False G105970
TU132457 other downstream 760345 19102293 ~ 19105269 (-) True G105890
TU132382 other downstream 1674419 18184484 ~ 18191195 (-) True AMCG00011316
TU132383 other downstream 1674419 18184484 ~ 18191195 (-) False AMCG00011316
TU132338 other downstream 1865169 17999668 ~ 18000445 (-) True G105793
TU133362 other upstream 3185414 23053316 ~ 23060966 (-) True AMCG00011409
TU133710 other upstream 5144303 25012205 ~ 25018332 (-) True AMCG00011445
TU134083 other upstream 6639041 26506943 ~ 26516507 (-) True AMCG00011485
TU134703 other upstream 9757182 29625084 ~ 29625387 (-) True G107713

Expression Profile