RNA id: AMCG00011358


Basic Information

Item Value
RNA id AMCG00011358
length 2140
RNA type mRNA
GC content 0.46
exon number 11
gene id AMCG00011358
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 19889328 ~ 19898258 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAAGCTCTGAGGAAATGACGTTGCGTCCCGCCCCTGCAGCTGCGGAGTGCAGAGCTCAGCTGCGGAGAGCTGCTGCCCAGAGCCGGAGGAGCCGCAGCCGCATCGACTGCACGCAAGAGAGACAGACAATGGTGCAGGTGAAGAGGATCTGTTGTATTGGGGCGGGCTACGTCGGGGGGCCCACCTGTAGTGTCATCGCCCAGATGTGCCCTGAGGTCACAGTCACAGTGGTGGACGTGAACGAGGAGAGGATTAAAGCCTGGAATTCAGACAGCCTTCCCATTTTTGAGCCTGGCCTTCAGGAAGTGGTGGATTCGTGCCGAGGGGTCAATCTCTTCTTCTCCACAGACATCAACAATGCCATTAAGGACGCAGACCTAGTCTTTATATCAGTAAATACCCCCACAAAGACGTTTGGGATTGGCAAAGGCCGAGCTGCAGACCTGAAGTATATCGAGGCGTGCGCTCGACAGATAGCAGAGGTTTCTACCGGATGCAAGATCGTGGTGGAGAAAAGCACGGTCCCTGTACGAGCTGCAGAGAGCATTCGGAGGATATTTAACGCCAACACCAGATCCGGTCTCAACTTTCAGGTCCTCTCCAACCCAGAGTTCTTGGCTGAAGGCACGGCCATTTCCGACCTCAAAAATCCCGACCGCGTTCTGATCGGTGGGGACGAGTCGGCTGAAGGTCAAAGGGCGATCGAGGCCCTCCGCAACATCTATGAGCACTGGGTGCCCAAGAAGAAGATCATCACCACCAACACATGGTCCTCAGAGCTCTCCAAACTGGCTGCCAATGCTTTCCTGGCCCAGCGGATCAGCAGTATAAACTCCATCAGCGCCCTGTGTGAGGTGACTGGAGCCGACGTGGAGGAGGTGGCCCACGCCATCGGAACAGACCAGCGCATCGGAAGCAAGTTCCTCAAGGCCAGCGTGGGTTTCGGTGGAAGCTGTTTCCAGAAAGATGTCCTTAACCTGGTCTACCTCTGTGAGGCTCTCAACCTGCCTGAAGTAGCAAGATACTGGCAGCAGGTCATAGAAATCAATGACTACCAGCGGCAGCGCTTTTCCTCCCGGATCAtcggctgtctcttcaacaccGTGACTGACAAGAAGATCGCTCTGCTTGGGTTTGCCTTCAAGAAGAACACGGGAGACACCAGagagTCCTCCAGTATCTCTATTAGCAGGTATCTGATGGATGAAGGAGCCCATCTGCACATTTATGACCCCAAAGTAAAGAAAGAACAGATCATTCAAGATCTCTCCCAGCCCACGGCATCTGATGATGACCCGAACAGAGTGTCTCGGTTGGTCACGATTTCCAATGACCCCTATGACGCCTGTGAAAATGCTCATGCCATTGTGATCTGCACAGAGTGGGACATGTTTAAGgTGGAGATAATTGGCAAGAGAATCAGTCAAAGAATTTCCTTCACAGCCACCAACGCAGAAGctcccccctccaaaaaaattaaactatAGAAGGTTTGGTTTTGGGAAGGGTAGttttagttcatttttattGGGTGGGAAAGGGAGTAATTTTATATtcagtattataataataattattattgtagtttattttactcTGGATATGTAACTGGATCATATACTGCACTCTTGTCAATAATCTTTGTAACTGGTGGTAGAGAATGACTGCATCTTCAAACGTCTCCCAGAAACAAAGGATGTTTGGAAATATCTcgtattttctcctacatgaaGGGACCATGATACGATCTGTAGTACTATGCAGATAAATatgcttaaaaacaataattctcATTTTTGCATTGAGATGAATTTTCACTTCAACACTTTAACTGATTTCCatgcaaaacaatgttttctgtatttttatttccttagacattttttgtttttagtttaatcAATGTTTTGTGTCACCTGGGAGGATCTACAACACGATTACTGTGAAAAACAGTGTTTTCCACATAGGCTATTGAAACCTATATAAAGGGTCCATGATGGAATTATACTTTTTTGCagtattgttaaaatatgtatttttcatgaagCTGTGATGAAACTTGTAGAGtatgtaaaggaaaaatatattattttttaaacgtgTATTATAAAGGGAATTCTGTACTTTATTTTGGTTACAG

Function

GO: NA

KEGG:

id description
K00012 UGDH, ugd; UDPglucose 6-dehydrogenase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132698 lncRNA upstream 85853 19803171 ~ 19803475 (+) True G106071
TU132641 lncRNA upstream 300355 19588193 ~ 19588973 (+) True G106022
TU132421 lncRNA upstream 1272263 18616850 ~ 18617065 (+) True G105858
TU132361 lncRNA upstream 1641560 18175355 ~ 18247768 (+) True G105811
TU132340 lncRNA upstream 1856303 18032755 ~ 18033025 (+) True G105794
TU132775 lncRNA downstream 58747 19957005 ~ 19995987 (+) True G106134
TU132783 lncRNA downstream 79989 19978247 ~ 20014348 (+) True G106138
TU132777 lncRNA downstream 88946 19987204 ~ 19995987 (+) False G106134
TU132784 lncRNA downstream 217713 20115971 ~ 20162966 (+) False G106139
TU132984 lncRNA downstream 717180 20615438 ~ 20615641 (+) True G106277
AMCG00011353 mRNA upstream 1698 19842173 ~ 19887630 (+) True AMCG00011353
AMCG00011352 mRNA upstream 259902 19619982 ~ 19629426 (+) True AMCG00011352
AMCG00011351 mRNA upstream 280303 19601365 ~ 19609025 (+) True AMCG00011351
AMCG00011347 mRNA upstream 390123 19485659 ~ 19499205 (+) True AMCG00011347
AMCG00011346 mRNA upstream 405182 19480738 ~ 19484146 (+) True AMCG00011346
AMCG00011360 mRNA downstream 3903 19902161 ~ 19909593 (+) True AMCG00011360
AMCG00011359 mRNA downstream 16354 19914612 ~ 19919189 (+) True AMCG00011359
AMCG00011361 mRNA downstream 56362 19954620 ~ 19955087 (+) True AMCG00011361
AMCG00011363 mRNA downstream 58214 19956472 ~ 19957634 (+) True AMCG00011363
AMCG00011364 mRNA downstream 88991 19987249 ~ 19995970 (+) True AMCG00011364
TU132491 other upstream 666907 19222055 ~ 19222421 (+) True G105916
TU132460 other upstream 771959 19112910 ~ 19117369 (+) True AMCG00011328
TU132321 other upstream 2101278 17784163 ~ 17788050 (+) True G105778
TU132132 other upstream 2907087 16978492 ~ 16982241 (+) True AMCG00011293
TU131803 other upstream 3905249 15963340 ~ 15984079 (+) True G105373
TU132810 other downstream 196971 20095229 ~ 20162966 (+) False G106139
TU132789 other downstream 213822 20112080 ~ 20162966 (+) True G106139
TU132801 other downstream 220317 20118575 ~ 20162966 (+) False G106139
TU132823 other downstream 397753 20296011 ~ 20339087 (+) False AMCG00011365
TU132939 other downstream 462950 20361208 ~ 20367223 (+) True G106242

Expression Profile