RNA id: AMCG00011359


Basic Information

Item Value
RNA id AMCG00011359
length 1817
RNA type mRNA
GC content 0.39
exon number 4
gene id AMCG00011359
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 19914612 ~ 19919189 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGAGATGTATCCAGCAAACCTTCTCCTCCCGTTAAGCGGGAGCTTTTACGACACAGGGACTACAAGGTGGACCTGGAGTCTAAACTGGGTAAAACAATCGTCATCACCAAAACCACTCCCCAGGCGGAGATGGATCAGAGAAATCTGGGGATGTCCATGCGTGTGGAGCGCTCTTCTCTTGACCAGGTGAAGAAGCGCTTTGAGGAGGAGAAAGCAAAGgcatacaaaaaggaaaagcagaagGAGAAGAAGCGCAAGGCGGATGATGATCTGAACTTCGAGGAAGATGATGAGATGGCAGCAGTGATGGGATTCTCAGGGTTTGGCTCTTCCAAGAAGGGCCACTGAACTATTCTTGTTTCAGTACTGACAAACACATCCGCCTCCTGGCTGATTCCTTTATTAACCAGATGTTTCTTAATCCCTTTTACAACAAAAGTGGATGCTCCTCGAACCAGCCTCAGACagttgaaagaaaatgtccGGCACTGAGCTCAGTTAAATCAGTGGGGCAAAGCACAGGATTACTGAACTGAACTTGTTGGTCCAAAGTCTACtgaactctttttttttttttttaaaggaaaaaagatCCACATTCCTCAAAAACTAGCAactaaactttatttaaaaaacaaactgaagtcgttgttttaatttgttttgtatttattccctTCTCAGTCATGCTGGCTGAAATATAATTGATGAACCAATGCAAGAATAGTGATCATCCCAGTGCAGACACAGATTTTCTAATACTGTACAATCCCTGTGTACGCAATTTGAAATGATAGAAGATCTCTGCTGGAAGGCATTAGTTTCCACATGGGTGGATGTTctgaaaaacagacaattaaAGGAATTAATAATTTTACTCCGTGTCTGCAGGGTTTATACGTTTTCAAATAAAgtttaattctttaaaaataccaGGTTTTTGTCTTGCTGAGAAACATAAAAGGCTCGGATGATGTTCTGAAATTGAACACGGCATGTGTTGGTCTGTCTACAACAGGTCTCCTAAAAAGGGTGTGCAGTGTCGAGAGGCCTGTGCTGTTTTCTTCTATTTAAGTTTAAAGGTCATAGTTGTGGAGCTTTCTCTTAAAATTggattttaaagttgttttttagGAATCTGAAGTTGAGAGGGTCACTTTCATTTTGGAGAAAACCTTGTACTGTAGCAATTGGCACAGCTTATTAAAATTCAGAGAATATTAGGTCTTGCAATAATCGCAAGGCTTTTAAGTACTGTGTCCCTTCCCTACGTTTACAGAAAGCCGGAGGTCTACAGTTCTGGTCCTCCATAGTAAAAGTGGCATGTTTATAGATAGATTTAAGAGATACATACATTGTTTACGAGTACTAATCAAGAAAACTTTGTACTATTATGTCATTTGTGGCTTTCCTGGAATGAAGCCCAGATAATTTAGCTCTTCGTGACTTGATATTCAGATCACTACTCTACATTAAGTGTTTTGAGCTGAGTGCATTCTTTAGCAGTGCAGCAGCTTCCAAATAATGCATAAACTTTCCAATCAGATGTGTAGAAGTGACCTCCTTACTTAGTATCACTTCTACCACTTATTGCCCCACTCTGGAACGTTTTGTAccattttatatgtttatatagtAGGGACATCTGAAAATTGAATGAAGTCAATTCCACATAATAAGGTTATTTCAAATTTTACTTTCTGGGTTTATCTGTGAAAAATAAGCCCCCCATGTATGTGTGTCATTGGTGAGccactgtatatttttgtttttccattctgCTAGTTTCTTAATAAATAGATTTTCCATCTTTG

Function

GO: NA

KEGG:

id description
K12848 SNU23; U4/U6.U5 tri-snRNP component SNU23

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132698 lncRNA upstream 111137 19803171 ~ 19803475 (+) True G106071
TU132641 lncRNA upstream 325639 19588193 ~ 19588973 (+) True G106022
TU132421 lncRNA upstream 1297547 18616850 ~ 18617065 (+) True G105858
TU132361 lncRNA upstream 1666844 18175355 ~ 18247768 (+) True G105811
TU132340 lncRNA upstream 1881587 18032755 ~ 18033025 (+) True G105794
TU132775 lncRNA downstream 37816 19957005 ~ 19995987 (+) True G106134
TU132783 lncRNA downstream 59058 19978247 ~ 20014348 (+) True G106138
TU132777 lncRNA downstream 68015 19987204 ~ 19995987 (+) False G106134
TU132784 lncRNA downstream 196782 20115971 ~ 20162966 (+) False G106139
TU132984 lncRNA downstream 696249 20615438 ~ 20615641 (+) True G106277
AMCG00011360 mRNA upstream 5019 19902161 ~ 19909593 (+) True AMCG00011360
AMCG00011358 mRNA upstream 16354 19889328 ~ 19898258 (+) True AMCG00011358
AMCG00011353 mRNA upstream 26982 19842173 ~ 19887630 (+) True AMCG00011353
AMCG00011352 mRNA upstream 285186 19619982 ~ 19629426 (+) True AMCG00011352
AMCG00011351 mRNA upstream 305587 19601365 ~ 19609025 (+) True AMCG00011351
AMCG00011361 mRNA downstream 35431 19954620 ~ 19955087 (+) True AMCG00011361
AMCG00011363 mRNA downstream 37283 19956472 ~ 19957634 (+) True AMCG00011363
AMCG00011364 mRNA downstream 68060 19987249 ~ 19995970 (+) True AMCG00011364
AMCG00011365 mRNA downstream 403861 20323050 ~ 20339325 (+) True AMCG00011365
AMCG00011373 mRNA downstream 819193 20738382 ~ 20739024 (+) True AMCG00011373
TU132491 other upstream 692191 19222055 ~ 19222421 (+) True G105916
TU132460 other upstream 797243 19112910 ~ 19117369 (+) True AMCG00011328
TU132321 other upstream 2126562 17784163 ~ 17788050 (+) True G105778
TU132132 other upstream 2932371 16978492 ~ 16982241 (+) True AMCG00011293
TU131803 other upstream 3930533 15963340 ~ 15984079 (+) True G105373
TU132810 other downstream 176040 20095229 ~ 20162966 (+) False G106139
TU132789 other downstream 192891 20112080 ~ 20162966 (+) True G106139
TU132801 other downstream 199386 20118575 ~ 20162966 (+) False G106139
TU132823 other downstream 376822 20296011 ~ 20339087 (+) False AMCG00011365
TU132939 other downstream 442019 20361208 ~ 20367223 (+) True G106242

Expression Profile