RNA id: AMCG00011360


Basic Information

Item Value
RNA id AMCG00011360
length 1809
RNA type mRNA
GC content 0.51
exon number 13
gene id AMCG00011360
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 19902161 ~ 19909593 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGCAGCGCAGTGCGCACCGGCGAGGAGGCACCATGGCGGACAGAGCGCAGATACAGGAGGCCATCAAAACACAGGGAGAGGCTGTGAGGAAGCTGAAGGAGCAGAAAGCCAGCAAGGACCAGATCGATGAAGAGGTTGCAAAACTTCTGGAACTGAAGGCACGACTAGGGACCGATGATGGCAAACACCCCTTTGTGCTCAAGACCCCTAAGGGTACAAGGGACTATAACCCCAAGCAGATGGCGATCAGAGAAAAGGTGTTCAGCACCATCATCGGCTGCTTCAAGCGCCACGGTGCCGAGACCATCGACACGCCTGTGTTCGAGTTAAAGGAAACCTTGACTGGAAAATACGGTGAAGACTCCAAACTCATCTACGATCTAAAGGATCAGGGTGGTGAGCTGCTGTCCTTGCGTTACGATTTAACTGTTCCATTTGCACGTTACTTGGCTATGAATAAGATCACCAACATCAAGAGATACCACATCGCAAAGGTTTATCGGAGGGACAACCCTGCCATGACCAGAGGACGTTACAGGGAGTTCTATCAGTGCGACTTCGACATCGCTGGCCAGTACGACCCAATGATTCCCGATGCCGAATGCCTGAAGATCGTTCATGAGATTCTGAGTGAACTGCAGCTGGGGGATTTCCGCATAAAGGTGAACGACAGGCGGATCTTGGATGGCATGTTTGCCGTCTGTGGGGTACCAGATGACAAGTTCAGAACCATTTGCTCGACTGTTGACAAGCTGGATAAGGCGTCCTGGGAGGAGGTGAAGAGTGAAATGGTTGGAGAGAAGGGAGGACTTGATCTGGCTGAGAAACTGCTTCAAGACGCCAAGCTATCCCAGAGCAAGCAGGCTGTTGCTGGGCTCACAGACATGAAGCAGCTCTTCAAATACCTGGAGCTCTTCAAAGTCACGGATAAGGTGGTGTTCGACCTGAGCCTGGCTCGGGGGCTGGACTACTACACGGGGGTGATCTACGAGGCCGTCCTGACGCAGACGCAGGCAGAGCCCCAGCCTCAGAAGCAGAACAGCAACGCGGCGGAGGAGCCGGCCAGCGTGGGCAGCGTGGCCGGGGGAGGCCGCTATGACGGACTGGTGGGGATGTTCGACCCCAAAGGCAGAAGGGTGCCTTGTGTGGGAGTCAGCATTGGCATCGAGAGAGTTTTCTCCATCATGGAGCAGAAGGCTGAGGCCTCGGCAGACAAGATCCGCACTACAGAGACCGAAGTCATGGTGGCTTCAGCGCAGAAGAACTTGCTGGAGGAGAGACTGAAGCTGACGGCTGAGCTATGGGATGCTGGAATCAAGGCTGAAGTCATGTATAAGAAGAACCCGAAACTGCTGAGCCAGCTGCAGCACTGCGAAGAAACAGGAATCCCATTTGTTGCCATAATCGGGGAACAGGAGATCAAGGATGGGGTTGTGAAGATCCGCAATGTAGCCACCAGGGAGGAGGTTGATGTGACCAGAGCTGACCttgtaaaagaaataaaaaataaactccagTCCTAAATTATGGTAGTTACCTCATATCGTCTGGATCTACAGCATTTCCCTCCTGGGACATCCTCTAACCACCAATAAACACTGAGCTTGAAATGCAGCAAATACACAACTTGCTCGTCTGTAATTATGTATAAGAATGAATTTATTGTGAAGTTCTTGCATTCCAACTGTATTGCCTTGCctaactcattgtattgtaggAAGAACTTGAGCCTTTCTGGAATAGTTTTCAagatcttaaaaataaactgtcccCCATGCAGGTGTTCAGTgcaagcactttttttttttt

Function

GO:

id name namespace
GO:0006427 histidyl-tRNA aminoacylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0004821 histidine-tRNA ligase activity molecular_function

KEGG:

id description
K01892 HARS, hisS; histidyl-tRNA synthetase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132698 lncRNA upstream 98686 19803171 ~ 19803475 (+) True G106071
TU132641 lncRNA upstream 313188 19588193 ~ 19588973 (+) True G106022
TU132421 lncRNA upstream 1285096 18616850 ~ 18617065 (+) True G105858
TU132361 lncRNA upstream 1654393 18175355 ~ 18247768 (+) True G105811
TU132340 lncRNA upstream 1869136 18032755 ~ 18033025 (+) True G105794
TU132775 lncRNA downstream 47412 19957005 ~ 19995987 (+) True G106134
TU132783 lncRNA downstream 68654 19978247 ~ 20014348 (+) True G106138
TU132777 lncRNA downstream 77611 19987204 ~ 19995987 (+) False G106134
TU132784 lncRNA downstream 206378 20115971 ~ 20162966 (+) False G106139
TU132984 lncRNA downstream 705845 20615438 ~ 20615641 (+) True G106277
AMCG00011358 mRNA upstream 3903 19889328 ~ 19898258 (+) True AMCG00011358
AMCG00011353 mRNA upstream 14531 19842173 ~ 19887630 (+) True AMCG00011353
AMCG00011352 mRNA upstream 272735 19619982 ~ 19629426 (+) True AMCG00011352
AMCG00011351 mRNA upstream 293136 19601365 ~ 19609025 (+) True AMCG00011351
AMCG00011347 mRNA upstream 402956 19485659 ~ 19499205 (+) True AMCG00011347
AMCG00011359 mRNA downstream 5019 19914612 ~ 19919189 (+) True AMCG00011359
AMCG00011361 mRNA downstream 45027 19954620 ~ 19955087 (+) True AMCG00011361
AMCG00011363 mRNA downstream 46879 19956472 ~ 19957634 (+) True AMCG00011363
AMCG00011364 mRNA downstream 77656 19987249 ~ 19995970 (+) True AMCG00011364
AMCG00011365 mRNA downstream 413457 20323050 ~ 20339325 (+) True AMCG00011365
TU132491 other upstream 679740 19222055 ~ 19222421 (+) True G105916
TU132460 other upstream 784792 19112910 ~ 19117369 (+) True AMCG00011328
TU132321 other upstream 2114111 17784163 ~ 17788050 (+) True G105778
TU132132 other upstream 2919920 16978492 ~ 16982241 (+) True AMCG00011293
TU131803 other upstream 3918082 15963340 ~ 15984079 (+) True G105373
TU132810 other downstream 185636 20095229 ~ 20162966 (+) False G106139
TU132789 other downstream 202487 20112080 ~ 20162966 (+) True G106139
TU132801 other downstream 208982 20118575 ~ 20162966 (+) False G106139
TU132823 other downstream 386418 20296011 ~ 20339087 (+) False AMCG00011365
TU132939 other downstream 451615 20361208 ~ 20367223 (+) True G106242

Expression Profile