RNA id: AMCG00011362


Basic Information

Item Value
RNA id AMCG00011362
length 1911
RNA type mRNA
GC content 0.50
exon number 5
gene id AMCG00011362
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 19909942 ~ 19912905 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TAAACATGGTATAAACATCCCCGTAGCACAGACGGTCACAAgaaagttttgtattttgagtTAGGAAATTGGTTTGAGTAATTTACTGTCACTAGTGAGTCTAACACGATTTTCAACTTAGTCCATTGTGATCTCGCACTTAAACCTTgagcaacatttatttaaaaagcgtATTTTAATGCCGGATGTTGATCATACTACTGTGATTTTATATCGCACTTGAAATAATTGTTGAGTtggtatacacacacacacacacaaacgtttcaaaactgaagaaaaacaagtgagTTAGCACCAGGACTTGACGAGGAAAAGTACCTGTAAGAGACACGAAAACTGCCATGTCGGAGCAGGAACACATGAAGaaaATCCCTGCCAATTGTTTGAACCAAGAGAGCGTGTCCTCCCTGAACGCATGGATAGAGAAGACTGGGGTGTCTCTGGTTCAAATCAACGGGCAGAGAAAGTACGGTGGACCACCTCCAGATTGGGACGGCCCGGCCCCCTCCGCGGGCTGCGAGGTGTTCATCAGCCAGATCCCCCGGGACATCTACGAGGACCGGCTGCTGCCGCTCTTCCAGCGGGTGGGCAAGCTCTACGAGTTCCGGCTCATGATGAACTTCAGCGGCCAGAACCGCGGCTTCGCCTACGCCAAGTACGGGGACAGCCAGAGCGCCCTGGTGGCCATCAAGATGCTCAACCACTACGAGCTGCAGAGAGGCTGCCACATCGCCGTGCGCAGGAGCACCGAGAAGAGGCAGCTGTGTCTGGGGGAGCTGCCCGGGCATGTGGACAAGGACCAGCTGCTCCTGATCGTGAGGGAGCTGTCCGAGGGGGTGGAGAACCTCAGCCTGAAGCCCGGGCCCAAGGGCAGCGAGAGCAGCGACGTGATCATCCACTACGCGTCGCACCATGCAGCGTCCATGGCCAAGAAAGTGCTTTGTGAAGgATTTAAGATGGTGTATGGCATACCGGTCAGTGTGAAATGGTTGAATCAGACGGCCAAACCGAAAGCCCCGAATGGCAAAGAGAAGCAGGCTTTGCCGTGTTCGCCTTTCATGCCGGCAAAACCTGCTCTTCCACCCGCCGTCGAGATGCCCAAGCCTAGTGCACTACTGACCGCAGCCAGCATCTTGTCTTCAGAAGGTCCCGGTGCCCCGGGTCCCCTATTCTCACCCGTCATCGCCAGAAGAGCACCGTGCAGAGATGCCAAGCAGCACCACTTTCAGATGAACGAAAGGGCCAATCGGGCTCCGATCGATGCGGTCGGTTTGTTAAGGCAGCTCTGTATTGGCTGCCAGTTGGGCTCCCCTCGCTATGACATGCAGTTCCTGTACACGAGCGCAGATGGCTTCCAGTATTTCAGATACCGGGTGGTTATTCCAGGGCTGCCCTCTCCTTTTACTGGAGAGGTGCACATCCTGCCCGGGGCCTTGGCAACCGTGCGGGAAGAGGTCAAACTGTCGGCCGCAGAAGAAGTCCTGAACCTCTTATCACAGGGGTAGACAAGTAGTGGGGTTGACCAGGGAATGTGGTCCAGAtgctttttttaagtttttatttcgttttaagttttaattctGTCAGATCTACACAGTATGGTCCCGAGTGTAGAATACCCATAACTgagaactgttttgttttacgtTCATGTTTGGGATGTACATAGTTCTAGGAAAGTACTGGTTTGGAATGTTTTGGGCACTTTTATTGACTAAGCAATGTGATTGTTTCAATGCACTTGATTTGGAATCTGTTAAAAGCATAATGACTGCACTGTAGAACTGCTTTTGgctttttagttgttttcatgttttgtatttcagctAGATGTGTTTGGGGAGTTTGTTTTACCCTGTGTGAAATGCAAGTTTGTAAAAGGTtcataataaatagtttttcaCTGAA

Function

GO:

id name namespace
GO:2000145 regulation of cell motility biological_process
GO:0010628 positive regulation of gene expression biological_process
GO:0007281 germ cell development biological_process
GO:0048255 mRNA stabilization biological_process
GO:0008354 germ cell migration biological_process
GO:0060047 heart contraction biological_process
GO:0043073 germ cell nucleus cellular_component
GO:0043186 P granule cellular_component
GO:0003730 mRNA 3'-UTR binding molecular_function

KEGG:

id description
K24981 DND1; dead end 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132642 lncRNA downstream 320970 19588175 ~ 19588972 (-) True G106023
TU132569 lncRNA downstream 429858 19422435 ~ 19480084 (-) False G105968
TU132566 lncRNA downstream 481995 19422435 ~ 19427947 (-) False G105968
TU132579 lncRNA downstream 496927 19410368 ~ 19413015 (-) False G105970
TU132842 lncRNA upstream 28124 19941029 ~ 20014274 (-) True G106163
TU132867 lncRNA upstream 158577 20071482 ~ 20115868 (-) True G106183
TU132868 lncRNA upstream 158577 20071482 ~ 20086764 (-) False G106183
TU132869 lncRNA upstream 158577 20071482 ~ 20095242 (-) False G106183
TU132870 lncRNA upstream 158577 20071482 ~ 20112210 (-) False G106183
AMCG00011356 mRNA downstream 42129 19866119 ~ 19867813 (-) False AMCG00011356
AMCG00011354 mRNA downstream 85790 19817467 ~ 19824152 (-) True AMCG00011354
AMCG00011357 mRNA downstream 150899 19730492 ~ 19759043 (-) True AMCG00011357
AMCG00011355 mRNA downstream 183577 19721154 ~ 19726365 (-) True AMCG00011355
AMCG00011350 mRNA downstream 339614 19550227 ~ 19570328 (-) True AMCG00011350
AMCG00011366 mRNA upstream 464037 20376942 ~ 20384649 (-) True AMCG00011366
AMCG00011367 mRNA upstream 473259 20386164 ~ 20390745 (-) True AMCG00011367
AMCG00011369 mRNA upstream 521553 20434458 ~ 20438919 (-) True AMCG00011369
AMCG00011368 mRNA upstream 527569 20440474 ~ 20477081 (-) True AMCG00011368
AMCG00011370 mRNA upstream 586217 20499122 ~ 20544751 (-) True AMCG00011370
TU132729 other downstream 42040 19865614 ~ 19867902 (-) True AMCG00011356
TU132572 other downstream 496927 19410368 ~ 19413015 (-) False G105970
TU132457 other downstream 804673 19102293 ~ 19105269 (-) True G105890
TU132382 other downstream 1718747 18184484 ~ 18191195 (-) True AMCG00011316
TU132383 other downstream 1718747 18184484 ~ 18191195 (-) False AMCG00011316
TU133362 other upstream 3140411 23053316 ~ 23060966 (-) True AMCG00011409
TU133710 other upstream 5099300 25012205 ~ 25018332 (-) True AMCG00011445
TU134083 other upstream 6594038 26506943 ~ 26516507 (-) True AMCG00011485
TU134703 other upstream 9712179 29625084 ~ 29625387 (-) True G107713

Expression Profile