RNA id: TU132823


Basic Information

Item Value
RNA id TU132823
length 3497
RNA type TUCP
GC content 0.42
exon number 4
gene id AMCG00011365
representative False

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 20296011 ~ 20339325 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTGACGCCTCTTTACCCGACAACTCCTGGAGTTTTGAAAGTCAGCAGCAAAAACCTGCCAACACTGACTGGCGTTTCTCCCAAGGACAGAGACCCGGACCCAGCGGAGCTCCCCAGCGTCCCGAAGAGGCCGGACCCTGGCCCAACCCCCCGACCGAGGCCGAGCAGCTGCAGGCGCTCATGGCAGCAGCTAATGAGGTGAGTGAAGCCACCAACACCCTGGGTGGGAGCAGTACCCTGGGACCCGGCACCATGGGCCTGAGCACCCGTTACAGCCCCCAGTTCACCCTGCAGCACGTCCCCGACTACAGGCAGAACATCTACATCCCCGGCAGCACGGCCACCCTGACCGGCAACAACGGCCAAGGCCAGGGCCCACCCCAGGGCCAGCCCCAGGCCCTGCCCCAGCCCCAGCCGCAGCAGCAGCCGCCGCAGCAGCCCCCCGCGGAAGCCCCCAAGCCTGCCCAGACCCCCGCCAACAAGAAGAAGTCTGCCAAGAAGGATAAGAAGTAAAGAGACCGGCCGGCGCagagcctgtgctgctgagggTCTCTGACGATGTCCACACCTGTATTGCCCCAAACGGAAACCCCCTCATTtcttttggttgtattttttttttcgttttgttggtttaatctGAATGTTACGAAGCTACAAAGTTGTTGTTGGTGACTTAAGGCATAAGCAGTGGgtttctgtttttggtttttgtaaGACTCCCCCATAGTGTATGTACCTTGTTATTTGAATATAACATGCAGTTATTTGGTAGAGGTATTATTCCTTAAGTTTTAAACTGGGGTATTCAAAAATTCGTTTGATCCCTTTGATGAATCCACATgggttttaaaactgtaaaataaaaatgaagaaatacatgGGGACTTATGGGCTTTGCCCTATAATGTAGAAATAGtataaatattaatcatttacaTATGCAGTGCGTCAAGTTATGGATTTTGTTTGACTGTTAAAATCGCAAAGTAGATGCTTCTCGTGGGAAAGGAATGACactattttgaattgaatttagGTTTCTTAGGAGAAAATCAGCTTTAAGAATCTCGCAGTAGCTCTTAGTCACGACGTAGACCGGTATTTGCATGATCCATTTCTTAACTAGAGAATTAAGCCACAGAAGGTAAACTATGCATTAAATAACAAGAAACAGTGTTCGACTGGTAAGAAGAGAACTAAAcagtatctttaaaataatgcatttgtagCATTGAACATACATAAATGACAGTTGCCTATAGTAATATAGtaagttaaaaacacaaataattttgtttgtttacatctaCATGCCATTTATGAGAAACACAATGTCAAGGTGATCTGAACGATAATCATCCTGCAGATATTATACAAGTGTTACATTCCATATAACTGTCTTAAACCGATTCCAAATAATGAAGCTACCACGGTCTCCACTGAAGAAGAAAGCTCAGTGTCATGGCCTTTCAGATAGGGGTAATGCCAATTGAAATGGGAGTTTACCACTGGTGTTGTCTCACTTTGGATCTGCTGGCAGAAACCTTGAAGATATAGGTTGTGTTGCTCTTGGATGGAACCATTATCTTACAATATAAGGCTTTGCATTTCCAGCAGTTAATTGCATGCATCTCGCCCGCATCACACCTTTGAAATGCACTAACACTGCTTCGCTTTACTAATGCTCAGCTATGCGTTGCATGTGACAGATACACTGCATGAAACGGCAGTTTCCATATTTAGTCCGAGCTGCAGGAACCTGGATTTTAGTCGACAGTGTGGGGGGAAGGCACGGGGCGGTCAGGGATATTTTAGTCTTTAAAAAACGAAAGGAGCAAAGATTAGGTTTGGGGCACTACTCGCTGAATGCGTCTCCTTTCAAGTTTGAGAAGGTATTTTCAGCTGATAATATGAGACAGAAGTTGTGCTCTTGGAGTCCCTCCTGACTGGGAGACAGGACAGAGATTTGGGGGGGGTGGTTATTGAAGGTAAAACTATTTTTCATTAAGGCACTAATCGATCGGGACCTGGACACTATTCGCGTTATTGCTTGTGATTCTGAGCTACGTACACTAGATGTAGGCAAGTTGCTTCTGATGTGTAAGATAAAtattatatagaaataaatacatatattttgttttatgcaatgtcaggtcaaagaaaacaaagggcaCTGTAGAGTAGAGAGAGATGGCTGTGAAAGGTCCAACGCGTGCAGCTGTGGCGCTCAAATGCTGGAGATTAGATTTGTTACTCAAGTCTCGATGCCTTACAGCTCTGCCGAACACACATTTACCAGTGCTAGAAGGCAAACATTGGGGGCCTGCTGGAATCTGTTAGGAGCGGAATATCTTATAGACATTCATCTGAAcgttaaatgtttttgttctttacagGTCAACAAATGTGACTTATAAGCGTACAGAGGGTCATTTGCACCCCTGCcaccttaaaatatataactaaattCATAAGCGTAGTAAACAATCCTGTTTGGTCTCTGATGTAGCCTCACGGTGAATCAAATCGCCCTTGCTGAGCCTGGAGTAGGTGAATTATACTCCGAAATTTGATTTGTCATAATAGCACGGATGCCTGGGGACTGCATCGCCATTTTGTGACTCATGGCCACTGTGTTTGCGTCATTTGCATTGGAAATTCAGGGAAGGCGGCAGAGCTGCCTTTCTGGCCAAAATCCTCGAGGTCTTTCACACCCCAACCAGACAAAGCACCAGTGACCGAGACAACAAGGTTATAAAAGCAAGACTGCAAGGGGAAACACCCGCACAGGCTCTGTattatgatttttgtgtgtgttttacatcaCAATTTCTACCTGCTTTTCCCAAAATTCATTCccattccttctttttttttttttcctcccgtGTAAATAAGACCAAATCGTGTCATTTGAGGACCAGCTGTCTGTATGGACCacttaaaaccataaaacaataatgaagcaaagaaataaaagccCCCAAGATGTGGCTACTACTggaatgttttgcatatttttcagaaaagagaaaaaaaaaaatgaaaaaaaaaaaatagttgtgTAGCAACTAAGCATTAGAGTCACTGACAAACGTGTAAATACAAGAAGGAAATCCACACAACAGTAGAGTAGAAACTTGTGACCGGTGTTGTgcatattttagtgttttttctgtattttatcaccaagtactaaaaaaaaaaataattcaaaagaaaaaaaaagtacaaaaaaaaaagattgtgttTCTAGCCATCTGTAactttttatatgtgtttgtgatttataaGTGTTTGTGCTGATGGAATGCTTTCCTGTCCCATTCAACTATATACATGTCTGCTGAAGAATTAAACTTCTATATTATACCTAAATATCTTTCTTATACATGCATAGATCAGTGCTTTTCTGTGTTACACCCATATTTTATATGctaatatttatattgctgttttattttctctttgaacactgacatttcaaataa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132784 lncRNA upstream 133045 20115971 ~ 20162966 (+) False G106139
TU132783 lncRNA upstream 281663 19978247 ~ 20014348 (+) True G106138
TU132775 lncRNA upstream 300024 19957005 ~ 19995987 (+) True G106134
TU132777 lncRNA upstream 300024 19987204 ~ 19995987 (+) False G106134
TU132698 lncRNA upstream 492536 19803171 ~ 19803475 (+) True G106071
TU132984 lncRNA downstream 276351 20615438 ~ 20615641 (+) True G106277
TU133009 lncRNA downstream 568363 20907450 ~ 20907653 (+) True G106298
TU133024 lncRNA downstream 613135 20952222 ~ 20952712 (+) True G106310
TU133048 lncRNA downstream 681123 21020210 ~ 21022119 (+) True G106327
TU133072 lncRNA downstream 689706 21028793 ~ 21033188 (+) True G106347
AMCG00011364 mRNA upstream 300041 19987249 ~ 19995970 (+) True AMCG00011364
AMCG00011363 mRNA upstream 338377 19956472 ~ 19957634 (+) True AMCG00011363
AMCG00011361 mRNA upstream 340924 19954620 ~ 19955087 (+) True AMCG00011361
AMCG00011359 mRNA upstream 376822 19914612 ~ 19919189 (+) True AMCG00011359
AMCG00011360 mRNA upstream 386418 19902161 ~ 19909593 (+) True AMCG00011360
AMCG00011373 mRNA downstream 399295 20738382 ~ 20739024 (+) True AMCG00011373
AMCG00011374 mRNA downstream 615707 20954794 ~ 20958447 (+) True AMCG00011374
AMCG00011380 mRNA downstream 788023 21127110 ~ 21131535 (+) True AMCG00011380
AMCG00011381 mRNA downstream 888123 21227210 ~ 21236755 (+) True AMCG00011381
AMCG00011387 mRNA downstream 980337 21319424 ~ 21385863 (+) True AMCG00011387
TU132810 other upstream 133045 20095229 ~ 20162966 (+) False G106139
TU132789 other upstream 133045 20112080 ~ 20162966 (+) True G106139
TU132801 other upstream 133045 20118575 ~ 20162966 (+) False G106139
TU132491 other upstream 1073590 19222055 ~ 19222421 (+) True G105916
TU132460 other upstream 1178642 19112910 ~ 19117369 (+) True AMCG00011328
TU132939 other downstream 22121 20361208 ~ 20367223 (+) True G106242
TU133378 other downstream 3002221 23341308 ~ 23341765 (+) True G106613
TU133383 other downstream 3016975 23356062 ~ 23356559 (+) True G106618
TU133489 other downstream 3409587 23748674 ~ 23753002 (+) True G106711
TU133992 other downstream 6017080 26356167 ~ 26360775 (+) True AMCG00011476

Expression Profile