RNA id: AMCG00011368


Basic Information

Item Value
RNA id AMCG00011368
length 2022
RNA type mRNA
GC content 0.54
exon number 17
gene id AMCG00011368
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 20440474 ~ 20477081 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTGCGCGCTGGGAAAGTTGTCATTGCTGAGCGCATTACGTGTCCTGCTCGACTTCCTGCGATGCACACTGATGGGATCGCTGGTACTTTCTGGAAAGTCGGTGCATAGGAAACTGGACGCACATTCCCGTACAGATGAAAAGAGGAGGGAGCTATACACGGCCACCAGAGCGCTGGACCTGCGTAAAGCACCCCAGGAGCAGACAACATGggTACTTCTGTCTTTTCAGATAGATGAAAGGGCAAGGTGTGTTTCTTACACTGTGTCGCCGATCCATGTGCTTCTGCTCGTATCTGGTGTCTGCGGTAGTTGCCAAGGTTTTACACGGCCCTTGCCTCTGCGCTTCCCCCTACAGCTGGAGAGGTTCACCAGCATGAGGATGAAGAAGGACAAGGACAAGGAGAAGCCGAGCATGCCCAGTCAGAGGCACTCCTCGGCCGCCCACTACGAGATCCCGGCTCAAACGGCCATGCTGCACGACCACCCCGACGAGTATGTGCTGGAACTCTTCGAGCAGATGTTGGTGGATATGAACCTGAATGAGGAGAAACAGCAGCCTCTGAGACAGAAGGACATCGCCATCAAGAGGGAAATGGTGTCCCAGTACCTCCATACCTCAAAAGCCGGCCAAGACCAGAAGGAGAGTTCCCGGTCCGCTGTGATGTACATCCAGGAGCTCAAAACAGAGCAGCGGGACAGCCAGCTGCTCAGCTGCCTGGAGTCTCTGAGGGTTTCTCTCAGTAACAATCCGGTCAGCTGGGTCCAGAATTTTGGAAAGGAGGGCcttgtgctgctgctgggcaTCCTGAGGAGACTGCAGGAAGACAAGGATGAGTGCTCGACagGTATTAGTGTCAAGTGTCAACATGAAGTGATCAGGTGCCTGAAAGCGTTCATGAACAACAAGTTTGGGTTGAAAGCGATGCTGGACTCGGACGATGGTATACCCCTGCTCGTCAGAGCCATCAACCCCAAAGTACCCAACATGATGGTGGACAGTGTGAAGCTGCTGTCTGCCATCTGCATCCTGGACCACCCGGAGAACCTACATGAACGTGTTCTGGAATCCATCACTGAAAAGGCGGAAGAGGACGGCATTGAGCGCTTCCAGCCCTTACTGTCAGGGATGAATAAACCAATCTTGGCTCTAAAGGCTGGCTGTATGCAGATGATCAACGCCCTGATCAGCCGAGGTGAGGAGCTGGACTTCAGAATCCACATCAGGAGCGAGCTGATGAGACTGGGCCTGAACGATGCCCTGAAGGACCTGCGTGTGATCGAAAATGAGGAGCTGAAGGTGCAGCTGGGCGTGTTTGAGGAGCACGCCGAGGACGACTCCGAGGAGCTGCGCATCCGCCTGGACGATGTCCGTATAGAGATGGAATATCCTTTACTGCGCTGTTTCACTGACATGACCGAAGTCTTCCAGATCCTGATGAACACGGTGAAAGACTCGAAAGCAGAGCCGCACTTCCTGTCCATCCTGCAGCACCTGCTCCTCATCCGCAACGACTACTTCGCCAGACCCCAGTACTACAGACTCATCGACGAATGCATCACCCAGATCGTGTTGCACAAAAATGGGGCTGATCCGGACTTCAAATGCAAGCGATTTAAGCTCGACGTAGAGGGGCTAATTGataacATGGTTGACCAGACCAAAGTAGACCTGAGTGAAGCAAAATCAGCTGAACTGGAGAAAAAGCTCGATGTCGAACTCACTTCCCGCCACGAGCTGCAGGTCGAGATGAAGAAAATGGAGAGCGATTTTCAGCAGAAGATCGAAGAGCTGAATGTTGAGAAAGACCTACTGGGGTCTGAGAAGCAGAGCAAAGAGAGCGAAAACCAGGCCCTACAGGGCGAAAACAGTGATCTGAAAGAGAAGATTGACAAGCTCTCCAAAGAACTGGAGGAAGCCAAAACCAGGGTCATCACAGTGCCTGTCCCCATGccacctcctccccctcccctgcctGGCCAAGCCTcgctgccccctcccccactgccAGGGCAAGAATGA

Function

GO: NA

KEGG:

id description
K05740 DIAPH1; diaphanous 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132920 lncRNA downstream 164169 20272063 ~ 20276305 (-) True G106224
TU132906 lncRNA downstream 222998 20217251 ~ 20217476 (-) True G106212
TU132870 lncRNA downstream 328264 20071482 ~ 20112210 (-) False G106183
TU132869 lncRNA downstream 345232 20071482 ~ 20095242 (-) False G106183
TU132868 lncRNA downstream 353710 20071482 ~ 20086764 (-) False G106183
TU132972 lncRNA upstream 9190 20486271 ~ 20488188 (-) True G106266
TU132985 lncRNA upstream 138357 20615438 ~ 20615642 (-) True G106278
TU133011 lncRNA upstream 434838 20911919 ~ 20912138 (-) True G106300
TU133063 lncRNA upstream 474679 20951760 ~ 20952855 (-) True G106340
TU133185 lncRNA upstream 1318544 21795625 ~ 21799926 (-) True G106448
AMCG00011369 mRNA downstream 1555 20434458 ~ 20438919 (-) True AMCG00011369
AMCG00011367 mRNA downstream 49729 20386164 ~ 20390745 (-) True AMCG00011367
AMCG00011366 mRNA downstream 55825 20376942 ~ 20384649 (-) True AMCG00011366
AMCG00011362 mRNA downstream 527569 19909942 ~ 19912905 (-) True AMCG00011362
AMCG00011356 mRNA downstream 572661 19866119 ~ 19867813 (-) False AMCG00011356
AMCG00011370 mRNA upstream 22041 20499122 ~ 20544751 (-) True AMCG00011370
AMCG00011371 mRNA upstream 168422 20645503 ~ 20660607 (-) True AMCG00011371
AMCG00011372 mRNA upstream 236857 20713938 ~ 20728141 (-) True AMCG00011372
AMCG00011375 mRNA upstream 415509 20892590 ~ 20907111 (-) True AMCG00011375
AMCG00011376 mRNA upstream 481783 20958864 ~ 20966129 (-) True AMCG00011376
TU132729 other downstream 572572 19865614 ~ 19867902 (-) True AMCG00011356
TU132572 other downstream 1027459 19410368 ~ 19413015 (-) False G105970
TU132457 other downstream 1335205 19102293 ~ 19105269 (-) True G105890
TU132382 other downstream 2249279 18184484 ~ 18191195 (-) True AMCG00011316
TU133362 other upstream 2576235 23053316 ~ 23060966 (-) True AMCG00011409
TU133710 other upstream 4535124 25012205 ~ 25018332 (-) True AMCG00011445
TU134083 other upstream 6029862 26506943 ~ 26516507 (-) True AMCG00011485
TU134703 other upstream 9148003 29625084 ~ 29625387 (-) True G107713

Expression Profile