RNA id: AMCG00011371


Basic Information

Item Value
RNA id AMCG00011371
length 6261
RNA type mRNA
GC content 0.38
exon number 6
gene id AMCG00011371
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 20645503 ~ 20660607 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACCTTACTTATAGCGTGCAATGACAGGGAGCTGAGAAGCCTTGCCTCCAGGCTAAAGGACTGGTTTGGAGCCCTTCACCAAGATGCCAACAGAGATCTTAAATCCACCGCATCTTCTGACACAGCACAAGGGCGGTTTGACACCAGCATCCTGCCCATATGCAAAGACTCCTTGGGATGGATGTTTAATAAGCTGGATATGAACTATGACCTGCTGCTGGACCACACTGAGCTGACTGCGATTTACCTGGACAAGTACGAGCAGTGCATGCAGCCGCTCTTCAACTCCTGCGACTCCTTCAAGGATGGAAAGCTGTCCAACAATGAATGGTGTTACTGCTTCCAGAAACCAGATGGCCTCCCATGTCAGAACGAAATTAATAGGATTCAAAACCAGAGCAGACGGAAGGCTCTTGTAGGAGCTTTTATTCCAAGATGCAATGACGAAGGCTACTTCAAGCCCACTCAGTGCCACGGCAGCACCGGgcagtgctggtgtgtggaCAAGTACGGCAACGAGATCGCCGGCTCCAGGAAGCAGGGCAACCCCACCTGTGAAGAGGACCAGGAGACCTCGGGGGACTTCGGCAGCGGGGGGGCTGTGATCCTGCTGGACGACCAGGAGGACGAGCGAGAGCAGGTGGGAGGGCGGCAGAAGGAGCGCAAGGTCAGGATCCACCCGCGAGGCGCCATCGAGGATGACGAGGATGAGGAGGACGACAAGGACGATGAGATCGGCTACGTCTGGTAGCTTCCCGGCAGCGCTCGAGGGACTCTCATTTATTGCACAGATCTGAAGCCATTCCACAGCTCCTCCTCTCACGTAACGGAAAAGCGAACGACGACGCAAACGCCAACCAACGACAACAGAATAATACGGACGCTCCCATTATTTGAGTTTGATTAGAACAGTAACACAACTGTGTCCTGCCTGTCCCCGCGCCCTGGGCTTCTCTTCTAGGTTTCCCGCAGCTACCCCCGAAATCCACTATTGTTTTATGGCAGATGCTTCTTTCTAAACCCATAGGCAGGTAGGCTCCTGGCAGAAATACTGTTGTATCACCACACAAACAAgttcataataatatttaacataACATTTACTCTTTTGTTACTGAAGTTTTACTCCAACATAGGCAGCAACTCATGTGATCAGAAATCTTGCTAAGTGAAGCTGCAGATATATCTTTTGGTATCATAAAAGTTTAGATTTTGGCATTCTTTTCAAAATAGTACCTACTCAGCATTTAAAcccatttcattttgcatttcctttgttttctgtgggCTTCTTCTGTGTCTTAAACTAAATACCATAGCAAAAATATAATGCTCAAATATTACTAATGTATGAAAGTCCTTATATGTAGAAAACAGCACTTTTTTAAAAGGATATTCACACAGTTGTTCCACAGGTCGAATACCTTGTTTTCCCTTTTAGGTTCGTACACTTTGCTGTACTGGCAAGGAAAATCTGCCGTGTCTCTGCTCTGAGACAGTCAAACCATTCATTTTATACTTTTTCAGAATGTGGAGATTTAATTTCCTGCCCGGAAGGTGGCAATTTCAGATCTTTCCAAATGTAttctatgaaaataaattaattcaataaactAGTACAGATCTTTCTGACTTTAAGGAAGACAAAGCTGCAAGGGGGCCAGTTTTGTCACTTTGTTTAAGGCATAAAAACGTCATTCGATCACAAATCAATCATCCAGCCTTCATTCTGATGACTCCCCTTAGTTGCGCAGCTGGAATTAATTGAGTTTTCCTTGTGGTTGAATTTATTATCAGTCTAAACTCTAAACAGTCTGCACCCTTCTGATAATAGACGTGCATCTTCAATAATATCGTTCATTCATCAGAAGCAGGCTTGCATTAAACTAGGAGTCCGGTTGTGCTTTGGTGTTCATTAGCTAGTGTTGTGACTTCTGtccaaaataatcaatttatcTTCTAGATTTGTCATCCATCGCTGCACTTGGGATCAAGCAGTTGCCAGAAATGAAAGGTTTAGAATCTCTGTTTAATGTCAGGGCATcataacagtttattttttttatacctgAACATTTCGATTTGAGATCAGAAATCCAGATCTCCCTAGCATGCGATTTAAGCCTTGTTAAGGATGCTTTTTGCTTTTCCTAACTAAACACCCCTGTCCAAAGCATTTGCCACCAATTACTCTTCCgtgaatacattataattagtATGATAAGTTATGTAGCTTTGTAAAGAGAATACATACAGGACTTTGTAGCATATATAAGTGGCTGAGCTTTGCTATTGACCCCAGACAAACTAGAGGAAGTGTAATGAATATAAAAGAAATGGAAGAGTGATGGGTAAttcaaagcaaattatttttccttctgtttcATTCATCCATTGCTGGATGTGATACACACCtgcactgctgtctgtgtgaTACACCAATAACAACACCTGTggagtttttcattttataattgatatctcgtttttgttttctgtagctttGTTATACCATGGCCCTCTTCCTCTCACAAGACTgagatgattttgttttgctatttcaTCTTCTACCAGTGCAAACATTAATATGGCCTTCCTGTACGTAACCCGTGCTCAATGAATGTATGATTATAAAGAGTGCCCAAGCCTGTAATCCTACGTATAGCCACTTTAGAGGCAATGTCAGCTGGCTGTTTAAGTCCGCTCTTTGTTGTCTGAAtgagaaatgctttttttaaagtataaaaaagGTGCACGAAAAAAGCAAAAGATCCTTTTAGTCACCCGatttaatgataaataaataaaattattcttACATTTGAAGGCTATCTTCTTTTGTGTGACCATGGAAGTCTTTGATGTTAAAAACGATCTTTTTGTATGTCCATTGTAGAAGTTGTGGCTGAACCAacttgatgttttgtttgtaactgTAGGTTTACACTTTGGCTTCTGTCTTGCtccattgttttacattatcCTGTATATAACAGTGAGGACATGAATTCCCAAATGTGaagcatttcatgttttcagatttataattatttagatttcttgttttattgtgtggttTGTTATTTTAGGGCGTTCttaagaataaattaattggATCTGGAAAGCGATGAGGGAAATGTGGTAGTCTTTACAAGACATGTGAAAGGAGATGTGTAATTTGAAAAACTAGGAGCATGACTTAATACTTTTTGTGCTTGCATATCTGTCTGTTCAACATGTTCGTAAACTATTtatgatattaaaaaacattgttttttaatatcataaatacaacatataaatatttgctttgtAAAACCACCGGCAGAGctaatgaatatttattaaatgtagtcaatcacaatgtttttgttttacaatggaATACTTCAAAAGATGAATAGTAAGATGTGTTTGGctaatagtaatagtaaaaaCTTTGGTGAATAAACAGTTGGGGAGGGAACAACAGTGTCTTACTGTACAGTTGTTTCATCAAAATGATTTCACTGACAGCTGTAATTCCACTGAGCAAAGATTCCCTTCAACAGCTTAAATGTGAACCAATTTGGTGTTGGTTCGCTATGGCAGCCTGCTTCCTGAATCTCTTGAACACAGTTTTGGTAGAAATGACTGAaatgacattttgtattcagtgcATGGGTGCGATTTCTCCCCAGCTCATATcctaattattaaattacaagtTGAGCAAACCTCACCCACTTGCCTCCAGCTAATGCAAAATATAGTGTGGTATCATGTCATTCAAATTGATTTTGCTGCTGTTCACGTGGCGGTGCATATAACTATACCCCAGTCAAACTCTGCTGACGTCAGTGCCTCCAACTGCAGCAAAATGATCAAATCTTTACCCAAAAAGGTGTTAAACTGGCAGCAGATGATCCCCCATATATATCTGATTTAATATTCTATAATCTAATCTTGGACAGAGAGGACAGTTACCAGTTGTTAGCAACTTGATTCTTGAAACAATGTTTAAAGGTCAAGTAATCTAGCACGATTTGGCACAAACCTACTCTGAAACAGAccctccatttcttaataataaccATAGAACCTGTATAAAAAATTGCAGAaacctttaatatttaaaaccttttaaacttttttgcAAGGATGTACCTCACTATTAGTCAGAAAAATTAAGAATCTAAAATCCTGACCTGTTAGATTACTCAGCAGGAAAGACTAACTCCATGATATACAGCATATCCTTCCCTTCCTGCCATGTACCCAATCCTAGCTGTGCTGGGCATTActttttgaatataaataagaCCTCTTTTAatcatcttttttgttattaagGTCTGAGGAAGTGTAAAAGAGGACATAATTGCTAGATATGCTTTACCTGTGGGCTGAAATAAGTTAAACAGTGCATTTCCCCATGCAATGGAACTGTAATCACAGTGGCTGTACtggaaaatgaaattaacatCTTAATAACAAGATGTGGGTTATTTCAGATGTTACTCTTATCCCTTTAAGCTGAATTCAACTTAATATTCTCACCTTGTGCTTCTGAAGTCTGGCTTCGCGTCATAGTCTAGCGTTGGGTGACATTCTTCttcaatattattcatattatttgattCCCCCTTCGTTTTAGGTTTCACATTGCTGACTCCTGACCCGCATTTGCAAGAATCATGCAATTGAGATCATGGTTGAGCAAATTTCTGTTAATATAGACTCTTACTTCGTACCCATAGTTTAGCTCTACTCAATAAGAGCTCAATATGGCAAGATGTGGATTGACAAGGTGTTCTTTCATAAGCTAAAATATTTGTGATTATGACTGCTGATTTGTGTGTAAAACattaagcaaaaaacaaactatgatGTTCTTTGGGGGCACAaactctttgtttttaatgtatctgAACTTTCCAATGCATCTACTGCACTAGAGCTAATTAGCTTTACTGGATATGTTTAGTCTTTTGATTTTCAGGTCTCTGGTAAGATAAGTCTGCCATCCTGGATAGGGCGTTGGTGTACTTTGTGTTAGTATAACCTTAAACCATCTCCTGTATAATAACTGGAAATACTAGGGGAACTTCCAATTCAGCAAATCATAAGGAAAGCCACTCTGACCTGTcgttgaaaaaatgtaaaagaaaaaacactgtagGGCAACTATTTGTTAAATTGTCAAGAGGAGATTCAACTCCCACAGAATACAAATCCACCAACAAATAACTGCTACTTCTATGTCTATTGAAGGTGACAAAACAGTAGAAAAATGCAAGGTATTTGTCTACCCAAATGcagcattttatatttactgaGGGAGAAcctggtgcattgtgggtaacaGCGAAAATTTTACTAAAGACTGGAGAGAGATTTGTAACACGAACAGTGAAATAACCCAACACCCAGAAGCTGCCCAGATCTTTTAAACTGAACACTGAACCAAACTGTGCATGGTGGTAACAGTTCTTTGTTATTGAAGTGTGAAGGTCCATTACTTGcaactttgtttgtttgtctgtctgtctgcgttcattttttttttatttcaggtttctttttgttccaggaagaaaaacataatgaCAAACCCGACAAActtttcaaatcaaatgcagAGCCATGCTCATTTTTTCACGCGTTTTGATTTTGACGTCAGTACGGTTAtttttgagaaatgtgtgtaGTACATTCGGTATGTGTTATAGTTTACCATAGTAGGATTTCTTCCTTCTGCTGTTGTTTGCAATATGTTCATTGGATATCAATCATGCAGTGCTTGTAAATCACCACAGCAAACCTGTAGAAGGGTGGCACTGCACTCTGACCGCTCAACACACATATCCCATGTATAAGACGTGGTTACTCAGTTGGATGCctttttgttactgttttccTCCCAATTTTTAATCTATTGAATATTGTTATAAAAGTCTTCAATGCACAATAACATAAATGGCCATATTTGCAGACGtcttatttgttaattttatattttttactttgtaaagaaaacaaaatgtaatataatgccATCTATGGCTCTGTGGCTGtgattatttgcatttaaacagtGTATAAGTTGATAGTCTTCAGTGTAGCTAGGTCTgtagctatttaaaaataatgtgtagtGAGTTCTGAATGTCTTTCCTTCTGGTTTTAAAATGgaatgttgatgttttttggCTGAATTTCTGATTTCAATGTAACTGTTCCATTTTGTCTGTCTGAATAAATTTTAGTCTGTCCATTA

Function

GO: NA

KEGG:

id description
K08136 SPOCK; testican

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132985 lncRNA downstream 29861 20615438 ~ 20615642 (-) True G106278
TU132972 lncRNA downstream 157315 20486271 ~ 20488188 (-) True G106266
TU132920 lncRNA downstream 369198 20272063 ~ 20276305 (-) True G106224
TU132906 lncRNA downstream 428027 20217251 ~ 20217476 (-) True G106212
TU132870 lncRNA downstream 533293 20071482 ~ 20112210 (-) False G106183
TU133011 lncRNA upstream 251312 20911919 ~ 20912138 (-) True G106300
TU133063 lncRNA upstream 291153 20951760 ~ 20952855 (-) True G106340
TU133185 lncRNA upstream 1135018 21795625 ~ 21799926 (-) True G106448
TU133190 lncRNA upstream 1214205 21874812 ~ 21875126 (-) True G106453
TU133191 lncRNA upstream 1266246 21926853 ~ 21928367 (-) True G106454
AMCG00011370 mRNA downstream 100752 20499122 ~ 20544751 (-) True AMCG00011370
AMCG00011368 mRNA downstream 168422 20440474 ~ 20477081 (-) True AMCG00011368
AMCG00011369 mRNA downstream 206584 20434458 ~ 20438919 (-) True AMCG00011369
AMCG00011367 mRNA downstream 254758 20386164 ~ 20390745 (-) True AMCG00011367
AMCG00011366 mRNA downstream 260854 20376942 ~ 20384649 (-) True AMCG00011366
AMCG00011372 mRNA upstream 53331 20713938 ~ 20728141 (-) True AMCG00011372
AMCG00011375 mRNA upstream 231983 20892590 ~ 20907111 (-) True AMCG00011375
AMCG00011376 mRNA upstream 298257 20958864 ~ 20966129 (-) True AMCG00011376
AMCG00011379 mRNA upstream 316076 20976683 ~ 20977159 (-) True AMCG00011379
AMCG00011378 mRNA upstream 320802 20981409 ~ 20989043 (-) True AMCG00011378
TU132729 other downstream 777601 19865614 ~ 19867902 (-) True AMCG00011356
TU132572 other downstream 1232488 19410368 ~ 19413015 (-) False G105970
TU132457 other downstream 1540234 19102293 ~ 19105269 (-) True G105890
TU132382 other downstream 2454308 18184484 ~ 18191195 (-) True AMCG00011316
TU133362 other upstream 2392709 23053316 ~ 23060966 (-) True AMCG00011409
TU133710 other upstream 4351598 25012205 ~ 25018332 (-) True AMCG00011445
TU134083 other upstream 5846336 26506943 ~ 26516507 (-) True AMCG00011485
TU134703 other upstream 8964477 29625084 ~ 29625387 (-) True G107713

Expression Profile