RNA id: AMCG00011374


Basic Information

Item Value
RNA id AMCG00011374
length 2374
RNA type mRNA
GC content 0.45
exon number 4
gene id AMCG00011374
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 20954794 ~ 20958447 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gCCAGTGCCACAAACCTCGCCTTTTCCCATCGCTGCTCTCAATACGGAGTTTGTCGTGATTTATAATAGTGTGCACTATCACCCACCTCACTAAACGCAGGCAGCCAACcatgtgcaaataaataagcattaaGTGCTTTGCTTACGGTGGTGGATTGGCCATCTGCCCCTGACAAGGTAACTAGAAATACGAGTCTGGAGCAGCTGGGTCTGACACCtgagtgtaaaacaaaaaactaaaacgtaTTGCATGTTTATCAGACCTTCCCCAGCTCAGCAGCGCAATGCATACACGCAAAAAGCAACGCAAGTCACCTAACCAGCTTTTAATTACCCTCGAAGTGAACCCGTGTCTCTGACGACCATTTCAATTATTCTAAGGTGCCCGTGTGGAAGATGTGGCAGTCCACAGTCTCGCTCCCGCTGCTGTCCGTGCTCGTCCTCGTGGCAGTGCGATACTGGCATCACCTGGGAGGGTTTTGCCGAAGCGTGTTCTCTGGCGGGGCAGGGAAGGGCTCTGGGAGGCGGGGGGCTGTTCAGCTCACTCACAGCTTTGTCCTCATGAATTCTACCCACGGGCAGCCCGACAGCGTCCTGCAAACCTTCGACCTGTACGCCCAGACACAGCCTTCCCTCAGCATCGGCAAAGAGAAAGGTGAGTTTGTGGACTGTGTGGTGCACAGGGTAGCTCCCACATGTGCTCTAGAGCTGGGGACCCACTGCGGATACACAGCCATTCGGATCCTGAGACGGCTGCCCTCCTCCGCCAAGCTGTACACGGTGGAGCAGGACCCGGCCACCGCAGAAGCCGGGGAGGAGATGATTCTAGTGGCTGGATTCAAGCATTCCCAGTTCCAGATGTTGATCTCGCCATCCTCTGCTGCTATTCCCAGGATGAGGGCAGAGCTGGGTGTGAGAGCGGTGGGGCTGGTGCTGATGGACCACGACGTGGAGCAGTACCTGCCCGACCTGCAGGCACTGGAACAGGAAGGCCTAGTCTCGACCGGCTCTGTCCTGCTGGTCAATAACACGCATGCCCAGGGAGCGCGGGACTTCCTGCGCTATATCCACAGCAACCCACGCTACTCTGTGCACAGCCAGAGACATGGCATGCTGGAGGTCCAGTGCCAACAGGGTTCAATCGATGGCACGAGGTAAGAACATGATGCTCCTGTGAGGAGTCTACCAGACTGTACCTTGACAAAAGTTGAGCAGATACTGGATAGTTGCTAGCCAATCATTTCAAAACAGAACCTCAAAATGTATGGAAACTTACTATGTTATAATGTTGGTACTGTTAATCAGTAAACGTATACCTTTAAATTGGTCACATAACTAATTGTTTGTAGTAATGAATGTGAGTTTCACAAGTATTCTTACTAATGGTAGAGGCAAGTGCAATTCCCCCAATTTACCACATGTAGGCATTAATAGAACATATGTTAAtggacaaaaacacattaaaacaaattggcaagtttttatttggtaaaaAGGACACCaattgattaatatatacacagtgcaCTGAATATGTGACACAATAGACCACAACTCACCTACCGTTtcaaatagaatacattttatattcgTCAATCAACAACTTTAACAGTTGATGGCTTTGTCCCGGACACGTCAAGAACTTAGTGGTtggttttttacattttcttgaacTTTATCATTTATCATTGTTAGAATGATTTAAgattaatataatcaaattgCAGATGATAATCTCTGAGTCAGATGTAAAGGGGCCactgaaaaatattgtaataatctTTCAGGGATGCAAGGTAATGGCAGTCTCTATGGAGTCAAAATCATCATTCATGGGTAGATTAATTGAATTGTTAAatccaatttagttttttaacattttcaatcagAAGTTGTTCAAACCTGTTGACAAATCTAAGCATTTACTGTTGCAACTGAAaatatgcttgtgtgtgtatagcagatatgtacatttgtttggtttgttttcaaacagcaccatttccttttttgttggaaatatacaaacaattctttataaataaatgtgaagagTTAAACTGTTGTTGTACCACATCTTTTCGTAGACCGTATGCAGCTCAAAACTCAAACCTGCAGTTTACTTGCCTTGTTAGTTGTCTGGTGTTACTGTGTTTACAATCCAGAAAGCACCCCCCCATGTCTGATATTTCAGAGACACTGTAGCATGATAACAAGGTCAGCCCATGTGAAGCATGGAGAAGAAACAGTGAGAAACCCtgcatcattttatttctggtaAATCAATGCATTAGGGTTAGATTTCTTTGTTAACCTCCCTTATCCCTTTTTGGTAGGATGACTGAAGCTTGAATTATAATTGTCTCCATTCCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133024 lncRNA upstream 2082 20952222 ~ 20952712 (+) True G106310
TU133009 lncRNA upstream 47141 20907450 ~ 20907653 (+) True G106298
TU132984 lncRNA upstream 339153 20615438 ~ 20615641 (+) True G106277
TU132784 lncRNA upstream 791828 20115971 ~ 20162966 (+) False G106139
TU132783 lncRNA upstream 940446 19978247 ~ 20014348 (+) True G106138
TU133048 lncRNA downstream 61763 21020210 ~ 21022119 (+) True G106327
TU133072 lncRNA downstream 70346 21028793 ~ 21033188 (+) True G106347
TU133087 lncRNA downstream 173251 21131698 ~ 21132430 (+) True G106361
TU133088 lncRNA downstream 175808 21134255 ~ 21134613 (+) True G106362
TU133122 lncRNA downstream 257174 21215621 ~ 21241493 (+) True G106391
AMCG00011373 mRNA upstream 215770 20738382 ~ 20739024 (+) True AMCG00011373
AMCG00011365 mRNA upstream 615469 20323050 ~ 20339325 (+) True AMCG00011365
AMCG00011364 mRNA upstream 958824 19987249 ~ 19995970 (+) True AMCG00011364
AMCG00011363 mRNA upstream 997160 19956472 ~ 19957634 (+) True AMCG00011363
AMCG00011361 mRNA upstream 999707 19954620 ~ 19955087 (+) True AMCG00011361
AMCG00011380 mRNA downstream 168663 21127110 ~ 21131535 (+) True AMCG00011380
AMCG00011381 mRNA downstream 268763 21227210 ~ 21236755 (+) True AMCG00011381
AMCG00011387 mRNA downstream 360977 21319424 ~ 21385863 (+) True AMCG00011387
AMCG00011388 mRNA downstream 834081 21792528 ~ 21797963 (+) True AMCG00011388
AMCG00011390 mRNA downstream 910341 21868788 ~ 21876333 (+) True AMCG00011390
TU132939 other upstream 587571 20361208 ~ 20367223 (+) True G106242
TU132823 other upstream 615707 20296011 ~ 20339087 (+) False AMCG00011365
TU132810 other upstream 791828 20095229 ~ 20162966 (+) False G106139
TU133378 other downstream 2382861 23341308 ~ 23341765 (+) True G106613
TU133383 other downstream 2397615 23356062 ~ 23356559 (+) True G106618
TU133489 other downstream 2790227 23748674 ~ 23753002 (+) True G106711
TU133992 other downstream 5397720 26356167 ~ 26360775 (+) True AMCG00011476
TU134100 other downstream 5811991 26770438 ~ 26771214 (+) True G107202

Expression Profile