RNA id: AMCG00011375


Basic Information

Item Value
RNA id AMCG00011375
length 4810
RNA type mRNA
GC content 0.45
exon number 19
gene id AMCG00011375
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 20892590 ~ 20907111 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGGGGCTGGAGCTGCAGTGAGAGTTCCTGTGCGATGAGAGTGATGGATCCTGCGGCTCATTCATCTGCCCTTTCTGCTCTGTCTGGACACACTGTGCTACACTTGTAATGGCTACTGTGGAGGAGAGTCAAGAGCTGGAGTCTGGCTCCAACCAACCAGCCATTGAGGACGAGCAGACAGAGTTGGCATTGACTTCCAGCAGGGAGGAAGAGGCCCACAGCGTCCAGGAGGAGGATGGGAGACCAGCCCTCGCTGACCCTGAGTGGATAGAAGAGAGATTCAGGATTGACAGGAAGAAACTGGAAACTATGTTGCACTCCCCAGACAATGAAAATAGTACAACCGGTGAAGAATTCTTTCAAAAGGTGATGATGGAGACAAATACACAGATTAAATGGCCTTCCAAGCTGAAGATCGGGGCGAAATCAAAGAAAGATCCACATGTGAAGGTGGAAGGGAAGAGAAACAATGTCCTGGAGGCCAAGAAGAAGATATTAGATATTTTGGAAACAAAGGTGAATAAAGTGACTCTAAAGATGGATGTGGCCTACACCGAGCATTCCCATGTGATCGGGAAAGGAGGCGGCAATATTAAAAAGGTCATGGAGGAGACCCTCTGCCACATCCACTTCCCCGACTCCAACCGCAACAGTGTCAACGTGGAGAAGAGCAACCAGGTGTCAATAGCTGGGCCTGTGTGTGGTGTGGAATCTGCCCGGAGAAAAATAAGGGAATTACAGCCTCTGGTTCTGAGCTTTGACCTGCCTGTGGGGATTGTCCCACAGACTTTACCCGACCTCAACTCGCCACTCATTCAACAAGTAGCCCAGACCTTTAATGTCACCGTCACCTTCCAACAGCAACCGAAGATCTACACCACAACCTGCACAGTAAGGGGCCTGCAGGGCAGCTGCGCCTCTGTCAAGAAAGCCATGTCTGTGCTTGTTGAGATACTGGTTGGTGTGGAGACTAGTGTCACTGTGAGCACACAGCTCAACATTAGCTCCCAGCAGCACCTCTTTCTCATCGGCCAGAATGGAGCCAACTTCATCAACATAATGCAGGCGACCCAGACTCAAATCGTGCTGCCAGACTTAAACTCCCCACAGAGCCGCGCCACCCTACTGATACAGGGCACCACCGACGCTGTGTGTCTGGCCAAACAGCAGCTACTGGAttgtctgcctgtctgcttGATGTTTGACATGAAGGAGGATGGCGTGGAAGTGGAGCCACGCAAGCTCAGCCAGATGATGCACAACCTTGGGGTCTTCATCAGTGTCAAGCCCAGAGTGAAGCAGACGGCCAAGTCTGTAGTAGTGAAGACCTTGGAAAGGAATGCGGCTAACTTGTATGAAACCAGAAGATTGCTTTTGGGCCTAGAAACCAGCGAGGTCCCCACGACAGTAAAGCCGACCCCTGATGTTCCCTTGACAAATAGCCTTACGAATTACTGGCTCAATCTGATCGCACAACAGCTCGGCCTCTTTGACGCAGGAGCGGTTGTGACTCCTGAAGCAGTAGTCAGTGCTCTGTTACAGGTGAAATCCAGGCCTTCACCTCCTCCAGGTCTCGGCCTTCAGCACGAAGAGAGCAGGGGAGCCCTGAAGGGAAACGAGAACAAATTGTGGGAAAAAATTTCAGGAACCGAACTTCGACAGAGCTCTTCTGGGAGTGAAAAGCCCAGAACGGAGAGTTCAGAACCCGAGGAACAAGCAGACGGTCTGACCTGGAGAAGCAGCCAGTTGGAAATCCACAAAGACCATAACCAAGGCGAAGGTGAATCGGCCACTTGCCAGGCAGCTGGAGTGCAGAAATTCATCCAGTCgttGTTTAAAGGTGATGCGGACAGTGACAATGCAGAGATAATAAGCAATCTGAAAACAGACAACTTGCAGAATCTGAATGAGgattatgattatgaaaagAAGAAACTTTTAGCGACAAGGGcCATGCAGAAGAAGCCGGTGGTGACGGAGGTGCGGACACCCACAGACACCTGGAGTGGCCTGGGCTTCTCCAAGTCCATGCCTGCCGAGGCAGTGAAGGAGCTGCGTGCTGTCAGTCGACGAAACTACAAGTCGTAcctcagcaacaacaacagccagACATGGGCTTTGCACCAATCCCTAAGTAAAGACAAGGTGGCCAGTGGGAGCAACTCTGAAAACTGGCGGGAACGGAGGGAATCTGCACCTTCATTCCAACCGGTCACCTCCAACTCCATgacctcttcctcctcctcctcctccttccccacCTTTGCGGGTCTCACAATGAGGAGTCGAGCAGACAAATCTACGGAGTCCCTTCTGAGCTGCAGTAATTACTTTGAGAGTGTCTCCTCTCTGAGCCGGCCGGGCAGCCTGGCCACCAGCCTGTCTCCTCCGCACTCAGCAGACCTGCCGGAGCTGTTCAGTCAGCTGGGCCTGGGGAAATACATCGACGTCTTCCAACAGCAAGAGATAGACTTTCAAACGTTTCTGACACTATCCGATGAGGACCTTAAAGAAGTGGGAATTTCCACTTTTGGGGCAAGGAGGAAAATGCTCCTAGCTATTTCAGaacttactaaaactaaaaagaagTTACTGGACCCCCCCACAGTGAAGTCGGGATATCTCGAAGGCGGGGCAAGTGGTCGCCTGCCACGCATCGTAGACATTGACGTGGCAGGACAGAGTAACTGCTGGTGAAGAGGAGTGGAGTGACTTCCATGACTTGAATAACCAGTTGTTCTGGAACAAAGACAACAAGCCACAGTCAACAAGTAAACAAGCTCTCACTGATGATAACTGGAGGTGCAGCCAGAATAGCACCCCCTCTCTGTTTGCACGGTCAGTGCCTCTCCTCAGACTGACCTGTGTGGGCTTTGGTTGTTGCCTGAACTGCTCAATGGGTACAATAGTCATGCTGTTATGCAGGAGCACATGTATTGAGAGGCTGTCGGAGGTGGTATATCTTGGATGCTGCTGCACATAATGTTGTGAAATTTACCAAACAGCATGGATGCGGCATTGGAAATAACTCTGGAAATAAAGAGCACCATCTGGCATGATTGCTCTCTGTCCTACACTGCTGTCAGTGtggaagaaaaatgttttctccTGCTGGGGAGACCAAATCAGAACTGACCCTAGCAAGTTACTATGCTCGCTACATTCATGATGCTGACTACATTCCCTGAGGTTTTATGTATCCATTGCCAAGATTTACCACCTCAAACTATGTGAAATTTGTACAGGAGGAAATTGAGTCTGCGTTAGCTTCTCTGACCatgttgttcttattttctgtCAGTCGAAAACCGTCTCCAGTATCTTATCTTGTCTGATCACTTCATCTGAAACTCCACAAGAGACCTTCAGTGTAGACGATCAATGTGATCTAATAAGACTTAAGGAGTTTACTACTGATGTCATTTGGTCTTTGAGCGCCAGTCGACATAGTGCAGTCACACAGCTCTGACACTTATCAGAACTGTCCACCGCGAGAAACTATTCAGTGATTTTCTGTCATTTGCAAACTATCTGATCACATCAAACTTAAAGGTTACTCTCAAACAGAGGTCTCCATTACTGAATAGCCATGTAGCCAtcagttcacattttcaaagaatATTTGTTATCATATTATAGCATCCAATCCCCAGTGTAGATGTGTGATTGTGGTGATAAAGTTTTCCTAAAATGctgctgtttgtatttttttttaagaataaagaCTAACAGAAGTTTGGGTGGAATTAGGCGAtatcttatttatttgcaattcCAATTATTAGACTTTAAAATAACCAACAATTAAATCCATTTGAATATCTATATGAAACAAAGTTAATGAGAGTCTAGATGTATTGGCAATGGTCTTCCAAGATGTTTTGCCAATTTGATTTGGAACTATTAAGATCTGGGAAACTTCAGCTCTGTAATAAGAGAGTGTATGGTATGTCAACTGTAAAGCAAGGCTGGGTAGGGTTAGAATACAATTAACCCCAAGGGTAAGGGATAGAATTGCAGAGTACAACATTAGACATGAGCTCATTTTCTGTCAAAGATCTCTCGAAGGAAGAAAGTGAAAAATTATTGTAAGTACCCAGTAATGCTTCTGTGTTCTCTTTACATTAAGCAATTCATCAAATGAAAGGATTAGGCCAATTATGCAGAATTCATGCCAATGAAAAATGATTCCTGTTTCCAAGGTTCATCAAGATGTAGCAACATCAAACCACATGCACCCAGTATTACCATTTACCCAAActgtattgcttttaaaatagtcattaatattagttttttgaATGATCCAAGCAATATAAGAAAACTGGTATACACCTTTTATTCCACCCCTATACTTTCATCATGAAAGGGTACAGGCATTGTAGTGCTATGGTAAAAACTTGGCAGCTATAATAATGTTTGAtctgttatataaaatatttaaataaactgttgaGTCTATCCAAAAGGCGTCTGTCTTTGTAGTGAGCATTAATAACATTAGTAGAACTAATGGATTTTGTAGGAGTTATGATAATTCtataggggaaaaaacattttacttttttataagATCACATTTTATCTGAAAAATTGCCCATGGgagttttgaatgatttataagtATGAAACTGTTCCCATCTCTGAACTTGTAGTAAAGAACTTGGCATATGTATACattctgatttctgatttcctttttcgaaaatcatattttgccactagagggcagcTCTGTCatctctgtgttgttgtttttaatgtttattttttattttttatttttttttgggggggggggggttaatgag

Function

GO: NA

KEGG:

id description
K18756 BICC1, BICC; protein bicaudal C

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132985 lncRNA downstream 276948 20615438 ~ 20615642 (-) True G106278
TU132972 lncRNA downstream 404402 20486271 ~ 20488188 (-) True G106266
TU132920 lncRNA downstream 616285 20272063 ~ 20276305 (-) True G106224
TU132906 lncRNA downstream 675114 20217251 ~ 20217476 (-) True G106212
TU132870 lncRNA downstream 780380 20071482 ~ 20112210 (-) False G106183
TU133011 lncRNA upstream 4808 20911919 ~ 20912138 (-) True G106300
TU133063 lncRNA upstream 44649 20951760 ~ 20952855 (-) True G106340
TU133185 lncRNA upstream 888514 21795625 ~ 21799926 (-) True G106448
TU133190 lncRNA upstream 967701 21874812 ~ 21875126 (-) True G106453
TU133191 lncRNA upstream 1019742 21926853 ~ 21928367 (-) True G106454
AMCG00011372 mRNA downstream 164449 20713938 ~ 20728141 (-) True AMCG00011372
AMCG00011371 mRNA downstream 231983 20645503 ~ 20660607 (-) True AMCG00011371
AMCG00011370 mRNA downstream 347839 20499122 ~ 20544751 (-) True AMCG00011370
AMCG00011368 mRNA downstream 415509 20440474 ~ 20477081 (-) True AMCG00011368
AMCG00011369 mRNA downstream 453671 20434458 ~ 20438919 (-) True AMCG00011369
AMCG00011376 mRNA upstream 51753 20958864 ~ 20966129 (-) True AMCG00011376
AMCG00011379 mRNA upstream 69572 20976683 ~ 20977159 (-) True AMCG00011379
AMCG00011378 mRNA upstream 74298 20981409 ~ 20989043 (-) True AMCG00011378
AMCG00011377 mRNA upstream 87341 20994452 ~ 21007340 (-) True AMCG00011377
AMCG00011384 mRNA upstream 104760 21011871 ~ 21021937 (-) True AMCG00011384
TU132729 other downstream 1024688 19865614 ~ 19867902 (-) True AMCG00011356
TU132572 other downstream 1479575 19410368 ~ 19413015 (-) False G105970
TU132457 other downstream 1787321 19102293 ~ 19105269 (-) True G105890
TU132382 other downstream 2701395 18184484 ~ 18191195 (-) True AMCG00011316
TU133362 other upstream 2146205 23053316 ~ 23060966 (-) True AMCG00011409
TU133710 other upstream 4105094 25012205 ~ 25018332 (-) True AMCG00011445
TU134083 other upstream 5599832 26506943 ~ 26516507 (-) True AMCG00011485
TU134703 other upstream 8717973 29625084 ~ 29625387 (-) True G107713

Expression Profile