RNA id: AMCG00011376


Basic Information

Item Value
RNA id AMCG00011376
length 3366
RNA type mRNA
GC content 0.52
exon number 5
gene id AMCG00011376
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 20958864 ~ 20966129 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGCCCATTCTGGCTCTTTGCTTGTTGAGTGCTGTTTTTTCTCTGGACCCTCTTACCCAACCCATTGGATATAAAGTTTTGGAAGAACAGCCCAGTGGGACCAGGATTGGAAAGTTGGCTGATGATTTGAGGTTGCGGGGAGCAAGCGGAGAGCTTGGGGACTTTCACATTGTGGATCATGTTCGAGCCCTGCCTTTTGTTGTGGGAGTAACTGATGGAGCTGTTTCGACTGTGGGCCCCCTGGACCGAGAAGCACTTTGCAAGGATAGCGACCCCTGTGTGATTCAATTCAACGTGCTTTACAGAAAAGGAGGTGCCATAGACTTTTTGCAGGTGATGGTGGAGGTCATGGATCTCAACGACCACAGCCCCTCCTTCCCGAACATTGAGCAGGAAATTGAGATTTCAGAAACTGCCACACTGCGCATGCGGATTCCTCTGGACAGGGCGCAGGATCCCGATGCTGGGCCCAATGCACTCCAGACGTATTCTTTGTCCCCCAACCAGCACTTTGCCCTGGATGTTGTCACTCGCTCGGAGGGCACCAAGCACGCAGAGTTAGTGGTCATCAAAGAACTGGACAGAGAGGTTCAGTCCTCTTTTGAATTGACTCTGGTtgcctgggataaaggcaaTCCCCCCCGATCGGGCAGCACACTGGTGAAGGTCAATGTCTTGGACTCCAATGATAACAGCCCAGTTTTtgaggacagtgtggtcactgtCGAGCTCAGTGAAAACACTCCTCGAGGGACCACCGTCATTAACCTTAAAGCCACAGATCCTGATCAGGGGGCCAATGGAGAGATTGAGTATTCCTTTAGTAAGCATGTCCCTTTAGATGTGCAGAACCTCTTTGCTATTGACCCCAAGACAGGTGCGGTGACCCTCATAGGGGAATTGGACTATGAGGAAAAGCGGAATTATGAGATTGACATTCAAGCCAGGGATCTGGGACCTAATGCCATCCCTTCCCATTGCAAACTGCAAATTAAGGTCTTGGACGTCAATGACAACGCACCCAACATTCTTGTCACCTGGGCACCACAGGATTCCGATGTTGCTTTGGTGTCTGAGGCTTCCACTGTGGAAACGTTTCTTGCTTTGGTGATGGTGTCTGATGCAGATTCCGGGGACAACGGGAAGGTACATTGCCAGATTAAGCATGGGCAGGGACATTTTCGGCTAAAGAAGATCCACAGAGACAATTACATGATAGTAACCAGCGCTGTCTTGGACAGAGAGAGCAAGACAGAGGAATCCAGTGAACTTGTTAAATCTTCATTTACCATCCACCCTACTGATGGGGCCATTTATGCTCAACGGCCTTTTGATTTTGAGCAATCCAAGCACTTTACTCTGATCGTTGAGGCTACAGATCAAGGACACCGCCCCCTGACCAGCAGCACTACTGTACAGATAAATATTCAAGATGTCAACGATAACTACCCAGTTATTGAAGAACCAGTGCAAAAGAGGGGCAGGGCATCAATCAACATCCCAGTGAACATGGAGACTGGGGAGATAGTTACAGAGCTGGGAGACACGCAGACTGACTCAACATCAGACTACTTCTTTCAACTTTCCTCAGGGACTAACAACACTGCAGCAAGACTCAGGCTAGAAGGTTACCCAGCCTCCACAATTAAAGCGAGTGATATGGATTCAGGCATAAATGGAGCAGTTTGTTACAGAATTATAAACGGAAATGCTGGTGGCTTGTTTTTACTCGATGAATTTACTGGACAGATATATGTGAATACCAGCAATGCTACTGAATTGATCGGAAAAGTGTTTGAGATCGACATTGCTGTCTCAGACATGGGTTCTCCCTCGCTTGTTACCAAAGCTACTTTGGAAATAATTTTTATCAACCTCCAGGACCACCTCAAGAATTCATCCCCTGGACAAAAGGGGCAACTGAGCTTTACTATGATGTTAGTCATCTGTCTGGGTGCTACCTGCCTGCTCCTGCTGCTGGTGGCTGCACTGGTTACCACCTTTTGCCGAACAGAAAAACGAGACAATCATGCTTACAACTGTAGACAGGCCGAGTCCACTTACACCAGGCACCCCAGGCGGCCACAAAAGCACATCCAGAAAGCTGACATACAGCTGGTTCCTGTGCtgagagggagaaaggaagAACCAACTGAGGGGGACCCACAAAAACCATCCACACCTGTTGATGATGTAGTTCCTGACATTCAAGAGTCCTTTCTCCCCTGTCAGTTCAGCCTGTCTCCATCCCTCAGCAGAACCATAAGAAACCAGACCTTCCCAGAGGACAACAGAACACTCCCTCTGCCCCAAACAAGAACCCTACGCAAACCCAGCAACATTGAAATTGATGGCACTCTCCCTCGGACCCCAGCAACCCCTTACAGGACCCTCCGCAGGGCCAAGATCTCGGAGGACATTCCGTCAGCTCCAGATACTGTATCTCATATGGGGACATTAAGGTGCCAGGGAAGCCCAGAAATTCAACGTGGGTCTGGGGAGACCTCAGattcatcctcctcttctccaGCATTTAGGACATTGAGAAGACCCAGAAATGCCGAGACTAAGATGAAGCAAGAGAGTGAAGACCACCATCGGATCTTGAGGAATCTGGTCCGGATGTCTATGGCTGCCTTTGGGGAGTATAACCCCATTGAGCTCTCGTCAGCTTCACCAGAGGTACAGCAAGTCTCCCAGCTGCTTTCCCTGCTGCACCAGGGCCAGTTCCAGCCAAGACCAAACTTCCGGGGAAATAAGTACTCTCACAGAGCTGGCAGGTCTGGAGCACAGGATGCCGATTGGCTGAGTACCAAGGACAGTGGCCATGGAGAGAGCGAAGCCGGAGACATGGACTGGGACACGGGGCGAGACTCTCCCACTGACCACCTACTGGGGGAGGGTCTGGACACTCTGCTCAACAACACAGATGATGTGTTTTCAGATTTCCCCGACCCTGCATGGATGGCCCGCCTGTCCCTGCCTCTCACCACAGACTACAGGGAGAATGTCTTTGTCCCAGAGGACGCCCGACCCCCGGAGGAGTCCTCTCCCCTGGAGGCAGCCGAGGAGGGAGCAACCTGCTTCTCCACCTTCGGGAAAACTTCTGGCAAAGGTGTGGCGCTGCCCGGGCACCTACTCTCTGAGGTCAGCACCCTCTTCGAGATGCTGCTCACCCAGAAGGCCGACTCCCAGGCCCAGCCCGCTGCGGAGGTGCTGTACAGACTCTCCGCTGCCTACCGCCGCTCGCTGGGCCTGGACGGGGCGGCGGGGGGTGCTACACAAACGCGGCACTCAGGGGCTGAAAACAGGTCTCCCGCCGCACTGCCTGCTGAGCTGGACTCACCAGGCCACCACATGGTCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133063 lncRNA downstream 6009 20951760 ~ 20952855 (-) True G106340
TU133011 lncRNA downstream 46726 20911919 ~ 20912138 (-) True G106300
TU132985 lncRNA downstream 343222 20615438 ~ 20615642 (-) True G106278
TU132972 lncRNA downstream 470676 20486271 ~ 20488188 (-) True G106266
TU132920 lncRNA downstream 682559 20272063 ~ 20276305 (-) True G106224
TU133185 lncRNA upstream 829496 21795625 ~ 21799926 (-) True G106448
TU133190 lncRNA upstream 908683 21874812 ~ 21875126 (-) True G106453
TU133191 lncRNA upstream 960724 21926853 ~ 21928367 (-) True G106454
TU133220 lncRNA upstream 1576520 22542649 ~ 22543019 (-) False AMCG00011391
TU133248 lncRNA upstream 1684371 22650500 ~ 22653658 (-) True G106509
AMCG00011375 mRNA downstream 51753 20892590 ~ 20907111 (-) True AMCG00011375
AMCG00011372 mRNA downstream 230723 20713938 ~ 20728141 (-) True AMCG00011372
AMCG00011371 mRNA downstream 298257 20645503 ~ 20660607 (-) True AMCG00011371
AMCG00011370 mRNA downstream 414113 20499122 ~ 20544751 (-) True AMCG00011370
AMCG00011368 mRNA downstream 481783 20440474 ~ 20477081 (-) True AMCG00011368
AMCG00011379 mRNA upstream 10554 20976683 ~ 20977159 (-) True AMCG00011379
AMCG00011378 mRNA upstream 15280 20981409 ~ 20989043 (-) True AMCG00011378
AMCG00011377 mRNA upstream 28323 20994452 ~ 21007340 (-) True AMCG00011377
AMCG00011384 mRNA upstream 45742 21011871 ~ 21021937 (-) True AMCG00011384
AMCG00011385 mRNA upstream 66673 21032802 ~ 21048249 (-) True AMCG00011385
TU132729 other downstream 1090962 19865614 ~ 19867902 (-) True AMCG00011356
TU132572 other downstream 1545849 19410368 ~ 19413015 (-) False G105970
TU132457 other downstream 1853595 19102293 ~ 19105269 (-) True G105890
TU132382 other downstream 2767669 18184484 ~ 18191195 (-) True AMCG00011316
TU133362 other upstream 2087187 23053316 ~ 23060966 (-) True AMCG00011409
TU133710 other upstream 4046076 25012205 ~ 25018332 (-) True AMCG00011445
TU134083 other upstream 5540814 26506943 ~ 26516507 (-) True AMCG00011485
TU134703 other upstream 8658955 29625084 ~ 29625387 (-) True G107713

Expression Profile