RNA id: AMCG00011380


Basic Information

Item Value
RNA id AMCG00011380
length 2156
RNA type mRNA
GC content 0.51
exon number 8
gene id AMCG00011380
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 21127110 ~ 21131535 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCTGTGTTTACTTAGGAAGGGCTGCTGTCCGCGGACAATAACACAGAGAGTGATCAGGGGATTTCCCGCATAGTTTTCTCCAtaaacttttccattttttttctttgcatgcaCACCCTTGCAAGGCATCTTTGATTGGCTGCCGACCCGTATAAATGGCAGCAGGTAGGCAGACGCAGCCCCACAACAGCCCGGCATCTGCAGGACGTAAACAGGAAGCGCTGCTCAGAGCATTTTCTGCTGCGCAACAAGGCGAGGATTTTCAGCGGATCAGCGCAGACTGAGACCCCGTAAGAGGCCACCATGTCGATGACAGTCAAAGCCTATCTCCTGGGCAAGGAGGACATCCACCGGGAGATCCGCAGGTTCACGGTGGACCAGGACGTGTCCACCAGTTTCGAGTACCTGTCGCGCAAAGTGGCCGAGGTCTTCCAGAGCCTCCGGAGCGCCAACTTCCAGATGCACTACAAGGaTGAGGATAGTGACATGATTGCCTTTGGCTCTGATGATGAGCTGATGATGGGCCTTGCTTGTGTGAAGGATGATACTTTCCGTATCTTTATTAAAGagaaGAGGGAGTGCAAGCGTGACTTCTTTCCCCAAGGATTCCAGGGCCCTGATCGCCATGGCCCCGTCCACTTCCCTccgcctccccctccccacATCCCTCCCAACATGGTGCACCCTCACGTGACATGCGACGGCTGTGAAGGCCAGGTGGCTGGAACGCGCTTCAAGTGCACCGTCTGCCCCGACTATGACCTGTGCTCCACCTGCCAGGCCAAGGGGCTGCACAAGGAGCACGCTCTGCTCCCCATCTGGGCTccctttcaaaatatgtttgagTGGTTCCCCCGTGGGAAGTGGCTGCGTAAGATGAGGCACACCATGCCCCACTGCATGTGGGCTGGAGCACAGAGCCAGGCCCAGCCCTGGCAGGCCGAACCCAAGCCCGCTGCTGCAGGGCATCCTGAGGGAGGGCCAGCCGAATCTCCCGATAACCAGGCCAATGTGGATTACCTGAAAAACATCGGAGAGGGGGTGGCAGCCATGCTGAGTCCTCTGGGCATCGATGTGGACATTGACGTGGAGCATGGAGGAATGCGGACCAAAGTGAACACCGCCCAGCCTGCCTCTGGAGGACCTCCTGCTGGCAAGTCTGGAAGCACGAGCAAGGAAAGACAGTCTGGAGAGGAACCAATGGAAAGTGACCCGGGCACAGCTGGGCCGAGTGGCATGCAAACTGAAAACGCTGGTGCAAAGGTGCAAAGGGAGCCTAACATTGAAGAAGAGTGGACCCACCTGTCCCCAAAAGAAGTGGACCCTTCGACGGGGGAGCTGCAATCGCTGCAGATAGAGGACGGGCATGAAGTGCCAGTGTCTCTCGATGCCTCTCCACCGAGCGGCCCCAGCGGTCTGAGGGAGGCGGCACTCTACCCACACCTTCCACAAGACGCAGACCCGCGCTTGGTGGAGTCCCTGGCTCAGATGTTGTCGATGGGCTTCACTGATGAAGGTGGCTGGCTGACCCGTCTCCTCCACGCCAAAAATTATGACATTGGTTCGGCATTGGACACCATCCAATACTCCAAACCTCCAGCTTCACACAAGAAATAGGACGTCCTGGTTCCTGTGCCAGCAGTGCAACTGTCATTCCTGCCTTTCAGTGACCTATCATTAACTTGGCAAATAACACACACTGTAGAAATAATTTCCTGAAAatagaaactaaacaaattgtCATTACTTGATAATCTACTTAATGGTTTTTTGCACTTTGAAAACTGGTTTCcagattttacatttactaAAGTGTATAATACTGACTCAATAAGAATATAGCCCAACATTGTAACTGaaactagaaaaacaaaccctgtGTACTCAAGTTTTTAATTGATGAAAGGGAGGTAGACTAGGGCTACAAGTCAATTAAAAAGGATAGTCtataccaaaaatgtattttaaatctgcCCAGTGAAACACTGATGAAAAAGAACGGTCAACTATGATTGCCAGTTCTGTTCAATTGAGTTTTATCTTTGGTGTGAGTCTTTATATCAGGTGAAGGGTCTGATACTACAGCATAACTAGTTCACTCtgaatttcttttttctgccttgtctacaaataaaatgcttatGCAAAGTGTTTCT

Function

GO: NA

KEGG:

id description
K14381 SQSTM1; sequestosome 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133072 lncRNA upstream 93922 21028793 ~ 21033188 (+) True G106347
TU133048 lncRNA upstream 104991 21020210 ~ 21022119 (+) True G106327
TU133024 lncRNA upstream 174398 20952222 ~ 20952712 (+) True G106310
TU133009 lncRNA upstream 219457 20907450 ~ 20907653 (+) True G106298
TU132984 lncRNA upstream 511469 20615438 ~ 20615641 (+) True G106277
TU133087 lncRNA downstream 163 21131698 ~ 21132430 (+) True G106361
TU133088 lncRNA downstream 2720 21134255 ~ 21134613 (+) True G106362
TU133122 lncRNA downstream 84086 21215621 ~ 21241493 (+) True G106391
TU133180 lncRNA downstream 795364 21926899 ~ 21928577 (+) True G106443
TU133192 lncRNA downstream 801069 21932604 ~ 22062654 (+) True G106455
AMCG00011374 mRNA upstream 168663 20954794 ~ 20958447 (+) True AMCG00011374
AMCG00011373 mRNA upstream 388086 20738382 ~ 20739024 (+) True AMCG00011373
AMCG00011365 mRNA upstream 787785 20323050 ~ 20339325 (+) True AMCG00011365
AMCG00011364 mRNA upstream 1131140 19987249 ~ 19995970 (+) True AMCG00011364
AMCG00011363 mRNA upstream 1169476 19956472 ~ 19957634 (+) True AMCG00011363
AMCG00011381 mRNA downstream 95675 21227210 ~ 21236755 (+) True AMCG00011381
AMCG00011387 mRNA downstream 187889 21319424 ~ 21385863 (+) True AMCG00011387
AMCG00011388 mRNA downstream 660993 21792528 ~ 21797963 (+) True AMCG00011388
AMCG00011390 mRNA downstream 737253 21868788 ~ 21876333 (+) True AMCG00011390
AMCG00011389 mRNA downstream 792424 21923959 ~ 21924258 (+) True AMCG00011389
TU132939 other upstream 759887 20361208 ~ 20367223 (+) True G106242
TU132823 other upstream 788023 20296011 ~ 20339087 (+) False AMCG00011365
TU132810 other upstream 964144 20095229 ~ 20162966 (+) False G106139
TU133378 other downstream 2209773 23341308 ~ 23341765 (+) True G106613
TU133383 other downstream 2224527 23356062 ~ 23356559 (+) True G106618
TU133489 other downstream 2617139 23748674 ~ 23753002 (+) True G106711
TU133992 other downstream 5224632 26356167 ~ 26360775 (+) True AMCG00011476
TU134100 other downstream 5638903 26770438 ~ 26771214 (+) True G107202

Expression Profile