RNA id: AMCG00011382


Basic Information

Item Value
RNA id AMCG00011382
length 6752
RNA type mRNA
GC content 0.47
exon number 22
gene id AMCG00011382
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 21135426 ~ 21153802 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCTGTGTCTTCGTCACTGCAGCGCCGACAGCACGGGCGGCCCATGGAGTCCGGCGGAGAGCGGGCAGCGCGTCTGCACGGCGCAAACACGGCGCTATAAATCCAGCCCCGGCGGGACGAAAAGCAGAGCCCTTTTTCTTGCACGAAACCGTCGCTTTCGCCGCGCAGATGTGGATCACGCCGGAGGAGGTTTTGCTGGCCAACGCGCTGTGGGTGAGCGAGCGGGCGAACCCCTTCTTCACCCTGCAGCGCAGGAAGGGCCACGGCCGCGGAGGCGGCATCACGGGCTTGCTGGTAGGCACCCTAGATGTGGTCCTGGACTCCAGTGCAAGAGTGGCTCCCTATAGGATACTCCACCAGACACAAGACTCTCAGATCTATTGGAGCATTGCTTGCGGCTCATGCCGCAAGGAGATCACAGAGCACTGGGAGTGGCTGGAGGCCAACCTGCTCCAGACTCTCTCCATCTTTGAGAATGAGGAGGACATCACAACGTTTGTCAAGGGCAAGATCCAGGGAATCATCGCTGAGGAGAACAAGAGCAAGGAAAGCACCGAAGAGGAGGATTCTGGGAAATTCAGAGAAGCCGAGTTGAAGATGCGGAAGCTGTTTGGCATGCCGGATGAGGAGAAGCTGGTGAACTACTACTCTTGCAGTTACTGGAAAGGTCGTGTCCCTCGCCAGGGCTGGGTCTACCTCAGCGTCAATCATCTCTGTTTCTACTCCTTCTTACTGGGCAAGGAAGTGACCCTGGTAGTTCAGTGGACAGATGTGACCCAGCTGGAGAAGAACGCTACTCTACTGTTCCCAGAGAGCATCCGTGTCACAACTCGGGACACTGAGCACTTTTTCTCCATGTTCCTCAACATCAATGAGACTTTCAAGCTAATGGAGCAGTTGGCCAACATTGCCATGAGGCAGCTGCTTGACAACGAGTCCTTCTCCGCTGACCGCACTCTCCCCAAGCCCTGTAAGCCGCACAAAAATGTGTCGGCACTAAAGAGggACCTAGATGCACGAGCGAAGAACGAGAGGTACCGCGCCACGTTCCGTCTCACTCAGGACGAGAAGTTGGATGGACACACCGACTGCACTCTCTGGACCCCCTTCAGCAAGATGCACGTGGTGGGGCAGATGTTCGTATCAAACAACTATATCTGCTTTGCCAGCAAGGAAGAGGACTTGTGTCAGCTTATCATCCCGCTTCGAGAGGTGTCGATTGTCGAGAAAGCTGACAGCAGCAGTGTTCTGCCCAGCCCGCTCTCCATCAGCACCAAGAACAAGATGACCTTCCTGTTCGCCAACCTGAAGGACCGGGACTTCCTAGTGCAGAGGATATCGGACTTCCTGCAGCGCACCCCCGACAAGCTGTGGCATGACGGCAAAGAGCAGAGTGACCCCCCCAGCCCTGGATTCCCCTCTACCAGTCCCCCCTTCTCTAAGGAGAGCCCGCCTGGCTGGTATTACAGCTCTAACCTGCCCACCGCCTCCCAGGGCCTCCTCAGCATCTTCAAGAGGGATGCGCCTGAAGATCTGGGGCCTAAAGCTACGAAGGAGAAGATGAAAGAGGAATCCTGGAATATCCATTTCTTTGAGTTTGGCCGGGGGGTGTGTATGTACCGCACATCCAAGACTCGGGAGCTGGTCTTGAAGGGCATCCCTGAGAGCCTGCGTGGAGAACTGTGGATGCTCTTCTCAGGGGCGCAGAACGAGATGGCGACCCACCCTGGCTATTATGCGGAGTTGGTGGAGCAGTCGATGGGGCGCTGCACCCTGGCCACCGAGGAGATCGAGAGAGACCTGCACCGCTCGATGCCCGAGCACCATGCCTTCCAGAACGAGATAGGCATCGCCGCCCTGCGCCGCGTCCTCACCGCCTATGCCTGCCGCAACCCCAACATCGGCTACTGCCAGGCAATGAACATTGTCACCTCGGTGCTACTGCTGTACTGCAATGAGGAGCAGGCCTTCTGGTTGCTGGTGGCTCTGTGTGAGAGGATGCTGCCAGACTACTACAACACTAGGGTGGTGGgcGCTCTGGTGGACCAGGGGGTGTTTGAGGAACTGACCCGCGAGTGCCTGCCCCTGCTTTACGAGCGCATGCAGGAGCTGGGCGTCATCTCCACCATCTCCTTGTCCTGGTTCCTCACCCTGTTCCTCAGCGTCATGCCCTTCGAGAGCGCCGTGCTCGTGGTCGACTGTTTCTTCTACGAGGGCATCAAGCTCATCTTCCAGGTGTCCCTGGCAGTGCTGCATGCAAATATGGAGCAGCTCCTGGCCTGCAGTGATGAGGGAGAGGCCATGACTGTACTGGGCAGGTACCTGGACAATGTTGTGAACAAACAGACTGTATCTCCACCCATCCCTCACCTCCATGCCTTACTGACCATTGGGGATGAACCGCCACCCGAAATAGACGTCTTTGAGCTCATAAAGGCATCATATGAGAAGTTCGGCAGTCTGCGGGCCGATGTCATCGAGCAGATGAGATTCAAACAGAGGCTGAAAGTGATCCAGTCGCTGGAGGACACTGCAAAGAGAAGTGTGGTGAGAGCCATCATGACTGAGTCTGCCTTCAGTATAGAAGAGCTGGAGGAGCTGTTTGTTCTGTTCAAGGCGAAACACATCATGAGCTGTTACTGGGGGGCCAGTACCAGCGCGGCGGAGCGCCACGACCCCAGCCTGCCCTACCTAGAGCAGTACCGGATTGATGTGGGCCAGTTCGGCCAGCTGTTTGCGGCTCTCACGCCCTGGGGCTGTGGGGTTCACACCCCAACTATCGCCACCCGCGTCTTCCGCCTGCTTGATCAAAACAAGGACAGCCTCATCAACTTCAAGGAGTTTGTCACTGGGCTCAGTGGGATGTACCATGGAGACATGACTGAAAAACTAAAGATACTTTTTAAACTGCACTTGCCACCAGCCCTTTGTCCAGAAGAGGCAGAGTCGGCGCTGGAGGCTACTCAGTTTTTCACAGATGACGCCAGTCCACAAGATTCTCCTTTCCTGTCTGACTTGGACTTTCTGCTGCAGGAAGTGACTTCAGCTGACTGTATCAAAGGCGCAGAGGCTGGAGATGGCACTGGGaatggaaatacagaaaacaagaaagAAGAGAAGACCCAGGATTACAAATATTACCTGCGAATGTGGGCCAAGGAGAAGGAACCCAAGAAAGAGACCATCAAAGACCTTCCCAAGATGAACCAGGAACAGTTTATTGAGTTCTGTAAAACCCTCTACAACATGTTCAGTGAAGACCCCTGTGAACAGCAGCTGTATCACTCGATCGCGACGGTAGCCAGCCTCCTTCTGCATATTGGAGAGGTGGGCAAGAAATTTTCAAACCACAACGGAAAGAAGCCAGAGAACAACCTCACCAGCCCGTCCCTGGAAGTGCCTAATCTTGAAACGGAGGATGAAAGTGGCTCTGGAAATGCTAGCGGGGCTCAAGTCTCGAAGGCTGGAGAAGAACTAATGGTGCCCCAGCTGCCGAGTTCAGACGAAGAAGTCAAAGACGACACCTCGGTGTCCTCGTACTCGGTCGTGAGCGCGGGCTCACTGCAGTGTGAGGACATCGCCGATGACACGGTGCTGATTGGCTGTGGGAATCAGCGCAGGGGCAGCACTCTGGATGCCGATTGGTCCATCACATTTGAGCAGATCTTGGCCTCCATCTTAACTGAGCCCCCTCTGGTGGATTTCTTTGAGAAAAAGGTGGACATCCAGGTCAAGATGGCAGCGTGCAAGGCCCAGCGGACAGTGGAGAGGCAAGTCAGCTCCTCCAGTGAGTACGAACTGTCCTTGCTCTCGGGCTGAACTGTCCTTGATGAGTGAGTAGTGGTTTAATTTCTCAAAGGGGACACTTGACACTTGACATTAGACACTGCACCTCCCTAATGGGCCTGAACAGCCTTTGTACACTGGGAGCCTTGGCCTACATTACTGGGTTGTGCTCGCGTTTCTTCTCGCTTACAGCTATACCTGCTGGCTTCAGACACtgtctttgttttctaaagTATCGATAGAGGAGttttgtcacaatatatacGTTCATACACTATACAGTACAATATGCATACTCGCACTCACAGTATTCTCAACGCATCTTGTTCCAGTTAGTCCTTACAGCTAGTAATAGCAGTGCAATCCTTGTCCTCGTACCAAAGCTGCTATTGGATTTATACTGAAACTTCAAGCATTTGCATTATTCGAGCAAAAGGCTTTGGATGAAAGTATACAGTTGTGTGCATTAGCTgggaggaaataaatatattctgatATTCCATGAAGCTACGTTACAGGATAGTTCACATCCCAAATATCAAAATGCAAACCTACATATGTAATTCTGtcctattttgttgttgttgttgttgcgaCTTGGAACAGAAAGGCTTTTTGAGTGTTCATCGGAACAAGGCTTTGAAAAGATACACACAACAGATCAGAGTTTACAGAGaagtgacacattttgttttctttctatgtGGATACTTTTGCATTAAGACTCCAGATTAAGCTTGCCACaattcttttaaaattattttaatcacatttattaaactaCCTCTAAAAGTAGCCTGTGATTTCATGTatctttctccctctttcttcaCAGCCGCAGTTTATTTAGGCTGCACCTTTTTCAAATTTTATCTCTAAGGTATGACAGGCCAATATAAAGATAATATCCTTGGCCTGTGAGTGATTGTCTTATTGGCCTTAGTGTATCTGTTTGGACTATGgattttaatagaaaacatcAAACGATGGTATGCTTGAGTCTTTATGTTCAAGCAAAATTCACTTTAAACcattatttcagatttcttgTATCCTGGAAAGATAAGCTTAAATATGATTTCAGAGCCATAGCCTTTCTCTCAAAACTCATTTTGCTGCTTTAGGTAAAGACATCCCCTACAGGCTGATTAGCTGTAAACCAACAGACGGCACAGTCACATTGCTGTGCAGCTTGAGGTTGTGTAGGTATTTGTTGTCTGATATTTTAACCAAAGTATAGGAAAAAATGTGTGGTGTACACTAGATTGAAGAAGACAAAAATCTTATTAATTATAGAAAGGTTAGTTGACATTTATTCTGATCTATTTTGCCTAAGCCACTGGAGTTTATCTAAAAACTCACAAGCCTTAAGAAGTTTTAATTCCCTGTATgatagaaaaacaataaattataaataaatgtgattccTTTACTACTTATAGAACAGACATTCAATCCCAAGCAAACTCCTATATCACAGATAAAAATATAAGCTctaaacagattaaatatttacagatccTAAGGCATAGATACACATTATGATTGTGTATTTAGCCTACCACAATTAAGGGGTTTTAGCATTATAGATGTGTGTGAATTGTTCAGCTTTGCACACTGCATTTTCTATTGCTCTAAAATGCATTGATCTCAAGAGCTGGAGCTCAAGTACCATGGAGCAATCCTGTATGAAACATCttcttttcaaatacaatttaaagtagCAAAAGCATATTTGTAGGGTcatctttttgtcttttttttttttgtacttataATGCAAAGCAATGGATTATCACAAATACtagtattttacatattaagtaTTCTGTTCTATTTTTGTTCCTTATTCAAATTCAGTAAGGTTTATTGTGTTTCTGGCAAATGTTTTATCTTCCCTTTTATATCATTATCTTCGTTAGCCAAATTAAAGATTTTATACATGCACAGCTTGCACATAGATGGGAAGGAAACGAGAGCAATGAGGGGTTTTAACAAGTACAGcataaatgtttgcattatttcaatgttcATGATATTCATGTACACAGAATAAAATAGATCCAGTGTTTTGCAGTTCAAACAAATCCTCTCGGACAGCTGCAGAAGTCATAGGCCTATTTTCTTTCTGCGCCTACAGAGTTGTATGTTTCCCTTGTAGTTGCTTCTGCAGAAGGCCCTGTTGAGGTGTGTACACATTGTCTGCCAGTCGCTATATTTATTAGTCCAGCAACCATTCTTGGAACCTATTAAGGCTTTTATAATGATCATGACATTCATATTGAGTGAATAATTTGCACTTAAAGAAATATGCCAGCTAATGCAAATGTgatgtatatctatatacaactggaaaaaatgaagagaccacttgacattgatttctgaatttggagtggtctcttaattttttccagagctgtatatatatctgtgtcCTTGAATGTTTCTCATGTTTATATTTggactgtgtatgtgtgtattaatttCCTGTATCACCAATCACAATGAATGGGACCCATTTCTTTATTACTGCACTGAAATGTcatcaatgcattttaactaATAAGTTTAATTAGAAGCAACATTGTGGTGCAGCAGACCATAGTGTTTACTGTGCTACAACGATACAATGGGTTATGTGTACTTCCAGTGATTAttagattttctttaaatgtgaaatacactAATGGACTTTAGGCTATGTATGATTTTACTGTGCAAAAGTAATTCCTAATAATTTTATCCTTTTAAACAGCATCCTTTGTATTGCTGCTGTCCCTGTTACTGCAGTGTATCTTCAAGCTTTGCTAGACACGCTGTTTATCTGTCATCActgattcattatttatttacatgcacCGGATCAGTGCTAAACTTTTTATGTGTCCATGatctgtatgtactgtatgtctGATCTATCTAAGGTCAtatgtaataaagaaaaatgctgaattaaaaacaaca

Function

GO: NA

KEGG:

id description
K19951 TBC1D8_9; TBC1 domain family member 8/9

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133063 lncRNA downstream 182571 20951760 ~ 20952855 (-) True G106340
TU133011 lncRNA downstream 223288 20911919 ~ 20912138 (-) True G106300
TU132985 lncRNA downstream 519784 20615438 ~ 20615642 (-) True G106278
TU132972 lncRNA downstream 647238 20486271 ~ 20488188 (-) True G106266
TU132920 lncRNA downstream 859121 20272063 ~ 20276305 (-) True G106224
TU133185 lncRNA upstream 641823 21795625 ~ 21799926 (-) True G106448
TU133190 lncRNA upstream 721010 21874812 ~ 21875126 (-) True G106453
TU133191 lncRNA upstream 773051 21926853 ~ 21928367 (-) True G106454
TU133220 lncRNA upstream 1388847 22542649 ~ 22543019 (-) False AMCG00011391
TU133248 lncRNA upstream 1496698 22650500 ~ 22653658 (-) True G106509
AMCG00011383 mRNA downstream 60650 21064143 ~ 21074776 (-) True AMCG00011383
AMCG00011385 mRNA downstream 87177 21032802 ~ 21048249 (-) True AMCG00011385
AMCG00011384 mRNA downstream 113489 21011871 ~ 21021937 (-) True AMCG00011384
AMCG00011377 mRNA downstream 128086 20994452 ~ 21007340 (-) True AMCG00011377
AMCG00011378 mRNA downstream 146383 20981409 ~ 20989043 (-) True AMCG00011378
AMCG00011386 mRNA upstream 7527 21161329 ~ 21214630 (-) True AMCG00011386
AMCG00011391 mRNA upstream 1389037 22542839 ~ 22554137 (-) True AMCG00011391
AMCG00011393 mRNA upstream 1410297 22564099 ~ 22600783 (-) True AMCG00011393
AMCG00011400 mRNA upstream 1540339 22694141 ~ 22694827 (-) True AMCG00011400
AMCG00011398 mRNA upstream 1584876 22738678 ~ 22743075 (-) True AMCG00011398
TU132729 other downstream 1267524 19865614 ~ 19867902 (-) True AMCG00011356
TU132572 other downstream 1722411 19410368 ~ 19413015 (-) False G105970
TU132457 other downstream 2030157 19102293 ~ 19105269 (-) True G105890
TU132382 other downstream 2944231 18184484 ~ 18191195 (-) True AMCG00011316
TU133362 other upstream 1899514 23053316 ~ 23060966 (-) True AMCG00011409
TU133710 other upstream 3858403 25012205 ~ 25018332 (-) True AMCG00011445
TU134083 other upstream 5353141 26506943 ~ 26516507 (-) True AMCG00011485
TU134703 other upstream 8471282 29625084 ~ 29625387 (-) True G107713

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU423996 True 235 lncRNA 0.57 1 CI01000169 527994 ~ 528228 (+)