RNA id: AMCG00011384


Basic Information

Item Value
RNA id AMCG00011384
length 1710
RNA type mRNA
GC content 0.54
exon number 13
gene id AMCG00011384
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 21011871 ~ 21021937 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACTATGGAGCTCAAATGGAGGatgtgtgtgttgctgctgGCCCTGGGCTGCGCGGTGGCCCTGGCCCAAGATGATGTCGACGTCGAGGATGCGGACATCGAGTTGGAGGATGATATTAACGAGGCTGTAGAGGGAGAGGAGGCGGCCCCTAGCACCCCTCCAGTTCCCAAGGTGACCTACCAACCTCCTATTCCATCGGGTGATTTTTACTTTGCCGACTCCTTTGATGAAGGAACACTCGATGGGTGGGTTCAGTCAAAAGCAAAGAAGGAAGGCATTGATGAAGAGATTGCCAAGTATGATGGGCAATGGGAGGTGGAAGAAATGCAAGATACGAAACTCCTGGGAGATAAAGGTCTGGTTCTGAAGTCTCGCGCCAAACACCACGCCATCTCTGCCAAACTCCggaaaacttttgtttttgacacCAAGCCCCTCATTGATGAGTTTGTGGATAAGACCCCATACACGATCATGTTTGGGCCAGACAAATGCGGGGAGGATTACAAGCTGCACTTCATCTTCCGTCATAAAAACCCCAAAACCGGAGAGTACGAAGAGAAACACGCCAAGAAGCCTGATGCCGACCTCCGCACTTACTACACCGACAAGAAGACCCACCTCTACACCTTGGTGCTAAACCCGGACAACAGCTTTGAGATCCTGATCGACCAGACCGTTATCAACAGTGGGAACCTCCTGACTGACATGAGCCCTGCCGTCAACCCCGCCGCTGAGATCGAGGACCCTGATGACCAGAAGCCTGAAGACTGGGACGAGAGGCCCAAGATTCAAGACCCCGATGCAGTCAAACCTGAGGACTGGGATGAAGATGCCCCTGCCAAGATCGCTGATGAGGAGGCAGTGAAACCAGAGGGATGGTTGGATGACGAACCGGAGTACACCTCAGACCCCGACGCCATTAAGCCTGAGGACTGGGATGAGGATATGGATGGTGAGTGGGAAGCTCCTCAGATCCCCAACGCTAAGTGTGAGACCGCCCCTGGCTGTGGGCCGTGGCAGCGTCCAATGATTGACAATCCGAACTACAAGGGCAAATGGAAGCCGCCCATGATTGACAACCCTAACTACCAGGGAGTGTGGAAACCGAGGAAAATCCCCAACCCCGATTTCTTTGAAGATCTGCACCCCTTCCGTATGACTGCCATCAGCGCTGTGGGGCTGGAGCTGTGGTCCATGTCCTCGGACATCTTCTTTGATAACTTCATGGTCTGCTCGGAGCGCACGGTGGCGGAGCAGTGGGCCAAGGATGGCTGGGGGCTGAAGAAGGCTGCGGAGGGAGCTGCAGAGCCTGGTCTCGTTACTCAGATGATGTCGGCGGCGGAGGAGCGGCCCTGGCTCTGGGTGGTGTACATCCTGACCGTGGCCCTGCCCGTATTCCTGCTCTTCGTCTTCTGCTGCTCTGGGAAGAAAAAGACGTCGGATGCACAGTATAAAAAGACCGATGAACCTCAGCCTGATGTGActgaggaggagaaggaggaagaagaCAAGGAAAAtggagaggaggaagatgacaaggaggaagaggagaaacaaGgagaggagaagaAAGGCGATGGAGAGGAGAGCCAAGAAGAAGAGGTGGCTGAAGAAGAAAAGGAGGAAGATGGGGATAAAAGTGATGAGAAGAAAGATGACGATATTCTGAGAAGGTCCCCCAGAAGCAGAAAGCCAAGGAAGGACTGA

Function

GO:

id name namespace
GO:0006457 protein folding biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
K08054 CANX; calnexin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133063 lncRNA downstream 59016 20951760 ~ 20952855 (-) True G106340
TU133011 lncRNA downstream 99733 20911919 ~ 20912138 (-) True G106300
TU132985 lncRNA downstream 396229 20615438 ~ 20615642 (-) True G106278
TU132972 lncRNA downstream 523683 20486271 ~ 20488188 (-) True G106266
TU132920 lncRNA downstream 735566 20272063 ~ 20276305 (-) True G106224
TU133185 lncRNA upstream 773688 21795625 ~ 21799926 (-) True G106448
TU133190 lncRNA upstream 852875 21874812 ~ 21875126 (-) True G106453
TU133191 lncRNA upstream 904916 21926853 ~ 21928367 (-) True G106454
TU133220 lncRNA upstream 1520712 22542649 ~ 22543019 (-) False AMCG00011391
TU133248 lncRNA upstream 1628563 22650500 ~ 22653658 (-) True G106509
AMCG00011377 mRNA downstream 4531 20994452 ~ 21007340 (-) True AMCG00011377
AMCG00011378 mRNA downstream 22828 20981409 ~ 20989043 (-) True AMCG00011378
AMCG00011379 mRNA downstream 34712 20976683 ~ 20977159 (-) True AMCG00011379
AMCG00011376 mRNA downstream 45742 20958864 ~ 20966129 (-) True AMCG00011376
AMCG00011375 mRNA downstream 104760 20892590 ~ 20907111 (-) True AMCG00011375
AMCG00011385 mRNA upstream 10865 21032802 ~ 21048249 (-) True AMCG00011385
AMCG00011383 mRNA upstream 42206 21064143 ~ 21074776 (-) True AMCG00011383
AMCG00011382 mRNA upstream 113489 21135426 ~ 21153802 (-) True AMCG00011382
AMCG00011386 mRNA upstream 139392 21161329 ~ 21214630 (-) True AMCG00011386
AMCG00011391 mRNA upstream 1520902 22542839 ~ 22554137 (-) True AMCG00011391
TU132729 other downstream 1143969 19865614 ~ 19867902 (-) True AMCG00011356
TU132572 other downstream 1598856 19410368 ~ 19413015 (-) False G105970
TU132457 other downstream 1906602 19102293 ~ 19105269 (-) True G105890
TU132382 other downstream 2820676 18184484 ~ 18191195 (-) True AMCG00011316
TU133362 other upstream 2031379 23053316 ~ 23060966 (-) True AMCG00011409
TU133710 other upstream 3990268 25012205 ~ 25018332 (-) True AMCG00011445
TU134083 other upstream 5485006 26506943 ~ 26516507 (-) True AMCG00011485
TU134703 other upstream 8603147 29625084 ~ 29625387 (-) True G107713

Expression Profile