RNA id: AMCG00011386


Basic Information

Item Value
RNA id AMCG00011386
length 1458
RNA type mRNA
GC content 0.52
exon number 9
gene id AMCG00011386
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 21161329 ~ 21214630 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTTGCACAAGTGGTCCAAAGGAGCACCGAGCCGCTGCCTGTCCGCCGTGATGCTGCTGTTGGTTCTGCCCCGGTGCATGCTCTCCATCCGGGCGGACAAGAGCCTGGTGAGCGCCGATGAATATGTCACTGCCACGGTGAACGTGTCCGTCCTGGACTCCAAAGGCAACCTGAAACAGTTACCGATGAAGAACGACTGCAGGTATGGGAAGAATTCACCCAAGGCCGAGGCCAGAGGAGTGGTGATCGCACCCGCGGCCATCCATGGAGtgCCTGACAGACAGGGCTGCGATCCTCAGACTCATTTCATCGTCCCTCCCAAGGTGACGCACTGGATAGCGCTTCTCCAGAGAGGCAACTGCACCTTCAAAGAGAAGATCTTGAGAGCGATCTCCTTCAATGCCACTGCCGTCGTCATCTACAACAACTCGTCCAAGGAAGAAGCTGTTACCATGGCCCACGAAGGTACTGGGCAGACCGTAGCCGTGATGATCCCCGATTCCTATGGCAAGGAGGTTCTCAGCCACGTGGAGAAGAACCTTACGGTGCTGATGACTATCACAGTGGGGGCGCGTGGGCCGCAGAAGAACATCAACCGTGGCTCTCTTGTCTTCGTTTCCATCTCCTTCATCGTGCTGATGATCATCTCCTCCGCCTGGCTCATCTTCTACTTCATCCAGAAGATCCGCTACAGCAGCGCCCGCGACAGGAGCCAGCGCCGACTTGGAGACGCCGCCAAGAAAGCAATCGGTAAACTGACCACAAGGACTGTGAAGAAGGGTGACAAGGAAAACTATGCATTACAGGCAAGCCTGTACACTGGTATTTTCAGgcATGTCTTCCATAAAATCTGCGTGGACCCCTGGCTAAACGAACACTGTACCTGCCCCATGTGCAAACTTAATATTCTCAAAGCACTTGGAATTATGccaAACCTGCCATGTGTGGACAATGTGGCCTTTGATATGGACAGGATAGCTCGAAGTCAGACTGTCAATCAGAGATCAGCCCTGGGAGATCTAACTAACGAGAACTCAATCAGTCTGGAACCACTAAGGCATTCTGGGACGTCCCAGATCCCATCAGACGGGGAACTTACACCACGCACCGGAGAGATCAACATTGCTGTCACTAGAGTTCAAGGGCCTCGCACAGAGTTGCCCCTCCACAGTGACCTCCCCTTTCCTTTGTTAACAGAAGAATGGTTTATTATCGCCAGCTTCGGCCTGCTCAGCGCCCTCACACTTTGCTACATGATCGTCAAAGCAACCAGCAGCATTTCGACCAGCGATAACACTATTTTTGAATTCCtggtttatttctttcttcctttcctgtCTTCTGTAGGTCGCCACATTTTTAACCGAAACTCACTGTCCCCTCGGAACGTGGTGTGTGAAATCGAGCTTCCGGATATCCAGACTTCCTTGGACCTGTATGATGAAAACAAGTCCTGA

Function

GO: NA

KEGG:

id description
K15701 RNF130, GOLIATH; E3 ubiquitin-protein ligase RNF130

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133063 lncRNA downstream 208474 20951760 ~ 20952855 (-) True G106340
TU133011 lncRNA downstream 249191 20911919 ~ 20912138 (-) True G106300
TU132985 lncRNA downstream 545687 20615438 ~ 20615642 (-) True G106278
TU132972 lncRNA downstream 673141 20486271 ~ 20488188 (-) True G106266
TU132920 lncRNA downstream 885024 20272063 ~ 20276305 (-) True G106224
TU133185 lncRNA upstream 580995 21795625 ~ 21799926 (-) True G106448
TU133190 lncRNA upstream 660182 21874812 ~ 21875126 (-) True G106453
TU133191 lncRNA upstream 712223 21926853 ~ 21928367 (-) True G106454
TU133220 lncRNA upstream 1328019 22542649 ~ 22543019 (-) False AMCG00011391
TU133248 lncRNA upstream 1435870 22650500 ~ 22653658 (-) True G106509
AMCG00011382 mRNA downstream 7527 21135426 ~ 21153802 (-) True AMCG00011382
AMCG00011383 mRNA downstream 86553 21064143 ~ 21074776 (-) True AMCG00011383
AMCG00011385 mRNA downstream 113080 21032802 ~ 21048249 (-) True AMCG00011385
AMCG00011384 mRNA downstream 139392 21011871 ~ 21021937 (-) True AMCG00011384
AMCG00011377 mRNA downstream 153989 20994452 ~ 21007340 (-) True AMCG00011377
AMCG00011391 mRNA upstream 1328209 22542839 ~ 22554137 (-) True AMCG00011391
AMCG00011393 mRNA upstream 1349469 22564099 ~ 22600783 (-) True AMCG00011393
AMCG00011400 mRNA upstream 1479511 22694141 ~ 22694827 (-) True AMCG00011400
AMCG00011398 mRNA upstream 1524048 22738678 ~ 22743075 (-) True AMCG00011398
AMCG00011399 mRNA upstream 1528800 22743430 ~ 22753092 (-) False AMCG00011399
TU132729 other downstream 1293427 19865614 ~ 19867902 (-) True AMCG00011356
TU132572 other downstream 1748314 19410368 ~ 19413015 (-) False G105970
TU132457 other downstream 2056060 19102293 ~ 19105269 (-) True G105890
TU132382 other downstream 2970134 18184484 ~ 18191195 (-) True AMCG00011316
TU133362 other upstream 1838686 23053316 ~ 23060966 (-) True AMCG00011409
TU133710 other upstream 3797575 25012205 ~ 25018332 (-) True AMCG00011445
TU134083 other upstream 5292313 26506943 ~ 26516507 (-) True AMCG00011485
TU134703 other upstream 8410454 29625084 ~ 29625387 (-) True G107713

Expression Profile