RNA id: AMCG00011387


Basic Information

Item Value
RNA id AMCG00011387
length 2019
RNA type mRNA
GC content 0.50
exon number 7
gene id AMCG00011387
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 21319424 ~ 21385863 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACGTTCAAGGGGTCCCCGACCACAGTGCTCCTCATCCCTTCGCTCTACTTGGTGGCCTTCATCATTGGACTCCCAGCCAATGCCACAGCTCTGTGGGTCCTTATAGCCAGAACCAAGAAGATGCCCTCCACTGCTTTACTCATCAACCTGACCAGCGCAGACCTCCTGCTCATGGTGGTTCTTCCCTTCAGGATTGCCTACCACTTCCAGGGCAACAACTGGATCTTTGGGGAGGTCACCTGCAGATGTGTCTCTGCTCTGTTTTATAGCAACATGTATGGCTCCATTATTTGTCTCATGCTCATCAGTATTGACAGATACTTTGCCTTTGTTCACCCATTTGGTGCCCAGGCCTTCAGAAGCAGAAAAAACTCCATCTGCATGAGTCTCGCTGTGTGGGCGGTTGTGATAGGGGCCATGCTGCCATTGCTCCTCACTCGGCAGGCCTACACTGTAGCAAACTCAACCATCACCCTCTGCCATGACGCTCTTCCACAGATGGATCAAGAGAAAGTGTTCTTTCCATACTTCACCAGCCTCTTCGCCATCGGCTTTGTCATCCCCTTGTGTGTCATCTTGTTCTGTTACGGCTCGATTCTGTGGACGTTGGTGTCCAGTGACAAGCGCTACATCCACGCAGTCAAGGTTACAGTGCTTGTGCTGGTGGTCTTCATTGTTTGCTTCCTGCCCAGCAACATCATGCTTCTCCTGCACTACTCCAGTCTGTTGGAGAATAGCGAGGAATTGTATTTACCTTACATGATTAGTCTGGCTCTCAGCACCTTCAACAGCAGCCTTGACCCCTTCATCTATTACTATGTGTCTGATGATTTCAGAGCCAAGGCTACAAAgcTAACAGCACCATATAAAGACCACAGCAGTGAGAGAGGAGTGCCCATTTCTTCGGATGTGACTGCTACATTGGTCTTGGAAACAGCAGATCATGTCATTCACCTCAGTGTACAAGTGCCGTTCAGTTTCAGAATCAGTGTAGATAATGGCATACATGAAGTGGATAATCAAAGCGTGGAGATTTTACAGTCCCCGACCACAGTGCTCCTCATCCCTTCACTCTACTTGGTGGCCTTCATCATTGGACTCCCAGCCAATGCCACAGCTCTGTGGGTCCTTATAGCCAGAACCAAGAAGATGCCCTCCACTGCTTTACTCATCAACCTGACCAGCGCAGACCTCCTGCTCATGGTGGTTCTTCCCTTCAGGATTGCCTACCACTTCCAGGGTAACAACTGGATCTTTGGGGAGGTCACCTGCAGATTTGTCTCTGCTCTGTTCTATGGCAACATGTATGGCTCCATTCTGTGTCTCATGCTCATCAGTATTGACAGATACATCGGCCTGGTCCATCCTTTGAGTGCAAAGGTCTTCAGAAGCAGAAAAAACTCCATCTGCATGAGTCTCGCTGTGTGGGCGGTTGTGATAGGGGCCATGCTGCCGTTGCTCCTCACTCGGCAGGCCTACACTGTAGCAAACTCTACCATCACCCTCTGCCATGACGCTCTTCCACAGATGGATCAAGAAAAAGTGTTCTTTCCATACTTCACCAGCCTCTTCGCCGTCGCCTTTGTCATCCCCTTGTGTGTCATCTTGTTCTGTTACGGCTCAATTCTGTGGACGCTGGTGTCCAGTGACAAGCGCTACATCCACGCAGTCAAGGTTACAGCGCTTGTGCTGGTGGTCTTCATTGTTTGCTTCCTGCCCAGCAACATCATGCTTCTCCTGCACTACTCCAGGTTGTTGGAGAATAGCGAGGAATTGTATTTCCCTTACATGATCAGTCTGGCTCTCAGCACCTTCAACAGCAGCCTTGACCCCTTCATCTATTACTATGTGTCTGATGACTTCAGAGCCAAGGCTACGAAGCTGCTGAGAAAGAGGGGGGAGATGAAGACATGTTCTGTGATTCGCACAGTGATACTGTGTGTTCGGGTCTCGGGGGCCGATGTCAACCCTCATCTGAGGCCTGTGGTGGGGTCTACACTGACCAAGGCTCAGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133122 lncRNA upstream 77931 21215621 ~ 21241493 (+) True G106391
TU133088 lncRNA upstream 184811 21134255 ~ 21134613 (+) True G106362
TU133087 lncRNA upstream 186994 21131698 ~ 21132430 (+) True G106361
TU133072 lncRNA upstream 286236 21028793 ~ 21033188 (+) True G106347
TU133048 lncRNA upstream 297305 21020210 ~ 21022119 (+) True G106327
TU133180 lncRNA downstream 541036 21926899 ~ 21928577 (+) True G106443
TU133192 lncRNA downstream 546741 21932604 ~ 22062654 (+) True G106455
TU133195 lncRNA downstream 704194 22090057 ~ 22090265 (+) True G106457
TU133202 lncRNA downstream 925851 22311714 ~ 22311963 (+) True G106464
TU133216 lncRNA downstream 1157416 22543279 ~ 22544072 (+) True G106478
AMCG00011381 mRNA upstream 82669 21227210 ~ 21236755 (+) True AMCG00011381
AMCG00011380 mRNA upstream 187889 21127110 ~ 21131535 (+) True AMCG00011380
AMCG00011374 mRNA upstream 360977 20954794 ~ 20958447 (+) True AMCG00011374
AMCG00011373 mRNA upstream 580400 20738382 ~ 20739024 (+) True AMCG00011373
AMCG00011365 mRNA upstream 980099 20323050 ~ 20339325 (+) True AMCG00011365
AMCG00011388 mRNA downstream 406665 21792528 ~ 21797963 (+) True AMCG00011388
AMCG00011390 mRNA downstream 482925 21868788 ~ 21876333 (+) True AMCG00011390
AMCG00011389 mRNA downstream 538096 21923959 ~ 21924258 (+) True AMCG00011389
AMCG00011392 mRNA downstream 1118109 22503972 ~ 22506745 (+) True AMCG00011392
AMCG00011394 mRNA downstream 1214055 22599918 ~ 22603575 (+) True AMCG00011394
TU132939 other upstream 952201 20361208 ~ 20367223 (+) True G106242
TU132823 other upstream 980337 20296011 ~ 20339087 (+) False AMCG00011365
TU132810 other upstream 1156458 20095229 ~ 20162966 (+) False G106139
TU133378 other downstream 1955445 23341308 ~ 23341765 (+) True G106613
TU133383 other downstream 1970199 23356062 ~ 23356559 (+) True G106618
TU133489 other downstream 2362811 23748674 ~ 23753002 (+) True G106711
TU133992 other downstream 4970304 26356167 ~ 26360775 (+) True AMCG00011476
TU134100 other downstream 5384575 26770438 ~ 26771214 (+) True G107202

Expression Profile