RNA id: AMCG00011391


Basic Information

Item Value
RNA id AMCG00011391
length 7382
RNA type mRNA
GC content 0.44
exon number 6
gene id AMCG00011391
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 22542649 ~ 22554137 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCGGTGGCAGTTTATTTGGGAAGATCTGAACTTGAAAGTGATGCCGTGAGGAAAAGAGACGTTGTTGTGGCGGTTATTATTAAGCGCAGCGCTGTAAGTTAGTGCCGGGCGGccggaggaggagaggagaggagaggagaggagaggagaggaggatcAGGCCAGCTTTGTTTCCTGCAGGATCGCCTTTTCGCCGGGATATATGTGCgtgttgtgttgctttttgtttgtagGAACTGGTTGGGCCGCGTTGGGAAGCACTTTCGTGTAGTCGTGCGTCTTTGTTTTTGCGCTTCAGCTGGTGCAGTTGCTACTTTGTTCAACTTCCCACGTCGCGCAAAAACTTGTTTGGCTTTTGAGAAACGACGGCGCCGGCCGATGCGAGGGTCGTGGTGTGGTGTTTGGGTTTGAAAGCCTCGCATTTGCTGTGCTTTGTGTATATACCTTGCCATTTCCACTCTGCTCTTTCTGATGCATTCAAaaaaaaccaaccaaaaaaaaaacccaagGCTTTACAACATTTAAAGACTGTCCAGTGTTTCAAACCTGACGTGCACGTTTGGAAATAATCCTGCTGGgtttgcattttcacattttccctTTGTGTGCACGGTGCTTGGAAATCGGAAATGTGTTCACCTCTGATTTCTGTTTTACCCActctttttctttattgaacGAAGAATAATGCTTCAATGTTGTGTCCATGGGCACTTTCTTCCAGTGTGAGTCACAATAGCTGGTTTTCCAATAACGGGTGTTCGTGTGCACATAAACCCCAGTGAATGCCTGTTTGTCCTCTGTTGAAATGTGGCAGATATTTGCTGTCTGCTATTGTTTTGCATCCCACCAGATTGTAGGGGAGCCCGGCTCTTCTCAGTCCAGAGAAAAACTTGGGTCTTCTCGCCGACACACTCATGAGGGTTAGAGAAACCAAGCCCAGGAGTTTGGTAGATGAGATCTGGAAGTGCTTTATTGTAGTATCTTGTACAATATCTCCAGAGTCACTGAAAGATGCATCTGATCCCAAATAAAAACCGGGTAAGCTTTGATTGAAGTCGAGCAGCAGCTATCTTGTCAACTAAGTGAAAAggcatgtctggaggaaacaaatgtattcaagaTTAACAGAATTACATTCATTAACAGGGTGTGTGGTTGTCTTGTGCATAACTAATTACCAGCACATACTGTGGATGCTGATTGGATGCCTTAAAAGTTAGACAGGGATCTAGGGTCAGTAAGCTACAGACAAACGTGGTTATGATTGTTCATAACCCATTTCCAAATACTGTACTTATCTAACTGTCATTTTAAGCCTAGATCTAGTCTTTTTACACTGAATTATACACGTCTTTGGTGGTCATTTTCACTTCCTGCAAGATATGCTTATCAGTTTACTTTATATGCATCTACTTTAAGGTATACATGTAGGATACCCACACCCACGATTTAAAACTGCTGTTTGTGACAATAAATTCTGCCAACAGGTAACACTTTACACATTTTCTAAGCACTTCAGCAAAGCAATAATGCACAAGAAGCTGATATTATCCTCCAGTGACTACTGTAGAGCACATTGCACTCAACTCGTGTGTGCTGCTGCCTTTCATAAGGAAAGCATTGTAACGAAAttagtaaataatacatactgtagtgtagtgcaaATGCAGTGAGCTAAGACCCTAGAGACTGATTTAGTGCGTTTCAGTTCCAGTCAGGCATGATTAAGCATTGTCTAAAATAAGGTCTCTGGGGTACACAGGCTGGAGGACTTGGGTGTTTTTGCCTGATCCTGTAAACGATTTGTAGCTTAAAACTCTTCCAATTTGTATCTTTGAGCCCAAGTGCACAATTAACACACCTTTTTTTAGTCTGAGTGGCATAGGGGGAATATATACCTATTTCTAATTCACAATTGTGGGACCATGAATAGACACAATGCAAATCCTTGTATTTCCACTATtgtaaaaagcattttcatGGTAAATGTTGGTATAATTAGATTGTGGCAAACACCCTTAATGGAAGAattctaataaaatatttgacctTTTGGTAGCTACGCTATTATGTTAAAATATCCCGAAAGACGTGTCTAAAAGCCCACAGCAATGGAAATCCATCTGAATATATGAAAATGCAATGGATGCCGTAACATACAGTTTACAAGAGATTGTGTTCCAAGACTTTTCGCCATTAGAGCTTATGtgcaaagaaaagcattttgtcTGCATGGGCCTTGGGAAATCAATACGGTATACAGCTAGAGTGTCCTTGTCTGACTTTGCAGAAAGCACATTCACGAGGGTGAGCTCACAGTCCTTCAATCACTGTGAGCTGAGAAGGATTGACTGTTTGCAGCCGTCTGCAGCGGGAAATGGAAGGAAGTCCTAAGAGTGAAATGCATTGCGTTATCGCTGTCGGGCTCAGGGAGCTGTGTCCCCAGTTTCCTGTAGTTAAGATTATCATTTTGCTGTCGTCGCTTGGAAAGCATTGAGGCCTCGCGAAACTCCTAACAAGCCGATTACACTGTTGGGCACTAGCAGCTGGAGATAAGCGAGGGCCTGTATTGTGGAGGTCTTCCTGACCTGCTAAGTTGCTAGGTCAGTAATGGACACCTTTTTCAGTACGCAATGTTTTGAGTCTCTCTCGGACTAGGTCGTGCTACTTTGCATCTTCATCCGGTTTGGGAattaaaaaagggggaaacaTCTTGGTGATGACGTGGAGTCGGCAttggttgttttgttcttttgtccactttttttacttttaatttagcAAACAAATTATGGAAATGGCGTAAACTGTAAGGCCTATGTCATATTTTCACCAGCTGTACATGGTAGCAGGCTTGTtgagctttttgttttcagctgaTGCGCTGACTCATACCTCCTTTCCAGTTTGTCACTGGGAACAAGCTGTAGCCTGCAACTACTTTAATGTGTATCGCAATCAAATCTGTAATATAATCAGCAGCTTAATCGTTATACTGATGCATCTGAtttccaattaaatatttaaggaGCTTGCAGTGTAATTCTGCAATAGAGTACATTGGAAGGGCAGCAGGTTAAGAGTGACTGCTTTAGACAGTTTGCCttttatctatttttctttgtactgAGTCAGATGGTACAAGATACATCTAACTTCGAAAGTAGCCCAAACTATTTAAAGTGCTTGTATTCttataaaataagaatgaaatatatttaattcgGTCTTAGATATGGAAACAACACCATGGTGTTACCCTTGTCCAAAATCCCTGATATTAACCACAGTTGCTGTACTTCCTGGGGagcaaaaaaaagtaaatttgcTGTCCTGCTATATTTAACCAGCAGCTTTGATGTGGAGATAAGGCAACTGTGATGAAACTCTATGCACAAAACATATCTGCTAGTGTGACCTTGTGCATAAGGCAGGACTTGATGGTCAGACACAAGCCTGGTATTTATATCTCTGCTTTGGAAAAAGAGGATGGTAAAAGTAgtcaattattatattatagagCTGCTCTGTACAATACACTGATGAAGGTGTAGGTGCCATGGATTGGCCCGCTAATCTATTTTTCTCCTAATTAGCTTGGGAAGTGTACAGGTTACTATCATCTAAACAAGAGTCAAATTTACCTTATAGCCTGTGTGTCCTGCTGAGTATTTCCAAAATTGTTTTGTCTGCTGTTGCTATAAATGCTGAACAACATGAGACCACCTAGACAATAGAttacatttccccccccccgccaaaacatttttttatcttttccaATGAAGTTTAGAACAAAGAAtctcaaggaaaataaattgaataacaGGAACGCATGTGGCCAGCCacctgcctcctctccatttTGCAGATGTTCATAGTTCTGAGGATCTCGCATGCATTGAGAGGGTGCAGCCCAGCCCtttgaatttcaaaaatgtatcgAGAAGGAAAGACAGTGATGTTTGGCAGCTGTGGATGGGGaaggagggtgggggtgggaggaaATGGATTTTAGTAGCCGACATCCTCTTTCTCAAGTTGTGTTCATGACTCCTCAACAGCTGCATTCTGGCCTGTAGGCTCCATGCCTGGGTTGGGTGTGCGTAGAGAGGGTTCTGTTTCTGCAATAGTCAGATCTTTCAGGATAGGTGTATAGACGTgaatcttgtatttttttaattccaagaAAGAATATACAGATTATATTTGATATCTCCAGTTCATTGTATGTAAATTTTACAttggttgtgtatatataaaatgtagtttGCTGTGAAGGTTAACATTCTGACTAGTTAATCTTTATGAAATCAGTCTTGTGCAGGAACCTTTTGCTCTTTTTGCAggtgtctctcttttttttagCAAAAAGCTGCTGGTGACTCAAACCCCCTTCATGGTTTTATGGAATAGGCAGCTTTCTGGATGACTGCAGCCCTCTCTGTTCCTTTGAATGGTTTCAGCAGCAATTGAAGACCCTATAGGTCCCTGCATTGTAGGTTTTAACCATTTCCCTTTGGACTGTGTAATGAAGAGACCTTGTAAGGCTGACTGCTGAAAAACAAGAGTTGAATGCGAGCCAGAGGGCATTTCCACCACTGAAGACGGCAactcctttattttatttttttatccaaaaCATTTACTGTTCCGGTTTTGATTGGGGAAATTAAAGTTGACTTCGAGCGGATCAGACAATTACCAAGAGTCCTCCTTGTAAGACCACCAGGAGGACCCTTCTCTCTACCCTCAGTGCTGCGAAGGTAGTCTCTGCCACGGACCCTTGGGCTGCGAGCTGTTTAGCCTGAGAAGCTGGAGTAACTCTCCAGGGATTGCTTCCCCTCCTTGACTGTATACTACCGGAGAGTCGTCACCCTCATAGCCACCATGACTTCAATGTCCAGCTTGTTCTCCTTCACCAGCCCGGCTGTGAAGCGGCTCCTGGGGTGGAAGCAGGGAGACGAGGAGGAGAAGTGGGCAGAGAAGGCTGTGGATGCCCTGGTGAAGaagctgaagaagaagaaaggggCCATGGAAGACCTGGAGAAGgcgctgagcagcccaggacaACCTTCCAAGTGTGTCACCATCCCTCGCTCCCTGGATGGCCGGCTCCAAGTGTCCCACCGGAAGGGCCTCCCCCATGTCATCTACTGCCGTGTGTGGCGCTGGCCGGACCTCCAGAGTCATCATGAGCTCAAGCCCCTCGAGGTGTGCGAGTATCCCTTTGGGTCCAAGCAGAAGGAAGTCTGCATCAACCCCTACCACTACAAACGAGTGGAGAGCCCAGTGCTTCCTCCGGTGTTGGTGCCCAGGCACAGCGAGTTCAACCCCCAGCACAGCCTACTGGTCCAGTTCCGCAACCTGAGCCACAACGAGCCGCACATGCCTCTCAATGCTACCTTTCCAGAGTCTTTCCAGCAGCACAGTGGGGGCAACTCCTTCCCCATCTCGCCCAACTCGCCCTACCCCCCATCTCCGGCCAGCAGCGGCACCTATCCCAACTCTCCTGCCAGCTCTGGGCCCTCCAGCCCCTTCCAGCTTCCAGCTGACACCCCCCCGCCTGCCTACATGCCTCCCGACGAGCAGATGGGACAGGACAGCTCTCAGTCAATGGACACTGGGAACAGCATGGTCCCTCAGAACATGCCCAGGGGAGTAGACGTGCAGCCCGTGGAGTATGAGGAGCCCCGTCACTGGTGCTCCATCGTGTACTACGAGCTGAACAACCGCGTGGGCGAGGCCTACCACGCCTCCTCCACCAGCGTGCTGGTTGACGGCTTCACCGACCCGTCCAACAACAAGAACCGCTTCTGCTTGGGGCTGCTGTCCAACGTCAACCGCAACTCCACCATCGAGAACACCCGGCGCCACATCGGCAAAGGAGTCCACCTCTACTATGTGGGAGGGGAGGTGTACGCTGAGTGCCTGAGCGACACCAGTATCTTCGTCCAGAGCAGAAACTGCAACTACCACCACGGCTTCCATCCCACCACAGTCTGCAAGATCCCCAGCGGCTGCAGCCTCAAGATCTTCAACAACCAGGAGTTTGCCCAGCTGCTGGCTCAGTCTGTCAACCATGGTTTCGAGGCTGTTTACGAGCTCACAAAGATGTGCACTATCCGCATGAGTTTCGTCAAGGGCTGGGGGGCGGAGTATCACCGGCAAGACGTCACCAGCACCCCCTGTTGGATAGAAGTTCACTTGCACGGCCCTCTCCAGTGGCTTGATAAAGTACTGACACAGATGGGCTCTCCTCTTAACCCTATCTCCTCCGTATCCtaatgagagggagaggagctAGGGAgtgtctttttaatatatttttttttttttccctcaacgTTTGATTACTAAAACATGGTCTTCGAGGCTGAACTGTTTACACTGCCTGCGAGAGGGACTTTATCCTCAGGCAGTCCGAAGTATAGAGTGACTCATTGGCTACAAGCAATTTTTGCAGTGGTAAACACTAGTGGTGGCACAGACCGGATGAACAACTACAAACCTGTCATCTTCTCAGAGTAAAACACTACTGGAGACATCTGGCCTAGAgcaacttttcctttttttttttttttttccccatcccCTTTTTCTTCTGGTTTCCTTCATAAACCTGTTTTAAGAAAGCTTGTAAAAGCGAGCAGTCTCTTTCAATAGATTTTTGTTCAGTAGTTGAAATGGACTGAAATGGTAGTTCTTGTTTCCCCCCCTTCCTCCTTAAgccattaaataatttgttttcatactttgtttcctttcctaATGTCTAAACTCATCTATTTACATTCAAGGCATAGTTGTAGTAATGTCTATGACATCCAGAACCCTCTACATTTTTTTGTCCCCCCAGCTCTCCCCCCCCTTTTACTTCAAGGCAGAATACTAAATAATGgcttccttttaaataaaagcagtctTAAACCTTAAACATGCAATGTGGATTTTCCATTTTTGAACTGACTGAGTTTACTTCAGACATGGTTAAATTAAACATCAGGAATGGAAGATGGATGTTTCTTgatttaccattttattttacaatgtggtTCACATCTAAAGCTCATGAAGTTTGCTGACATCAAGGCTGATTTTGTTGCTTCTCATTGCTGTAACTTTGTGAAAGTAAAGAATCAATTATAATTGACTTAAACTAGAGTAGCTCATTTTGCTAGCTTTTATacattgtcatttttatgtattagCGAGGTATGTTGGTCTGCAGAAACACAGAATACTTGTTTTAATAAGGTAAgtaacacaatgaaaagcaCTGATCTTTACTGTATAGCTTGCTCTTACAGTGTTAGGAACAGATAACATGAGTGAAGTTAATCAGTTAACAATGTGattaacagaaatacaaataggg

Function

GO:

id name namespace
GO:0007179 transforming growth factor beta receptor signaling pathway biological_process
GO:0036342 post-anal tail morphogenesis biological_process
GO:0048514 blood vessel morphogenesis biological_process
GO:2000223 regulation of BMP signaling pathway involved in heart jogging biological_process
GO:0009880 embryonic pattern specification biological_process
GO:0043049 otic placode formation biological_process
GO:0048264 determination of ventral identity biological_process
GO:0060022 hard palate development biological_process
GO:0060030 dorsal convergence biological_process
GO:0001947 heart looping biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K16790 SMAD5; mothers against decapentaplegic homolog 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133191 lncRNA downstream 614472 21926853 ~ 21928367 (-) True G106454
TU133190 lncRNA downstream 667713 21874812 ~ 21875126 (-) True G106453
TU133185 lncRNA downstream 742913 21795625 ~ 21799926 (-) True G106448
TU133063 lncRNA downstream 1589984 20951760 ~ 20952855 (-) True G106340
TU133011 lncRNA downstream 1630701 20911919 ~ 20912138 (-) True G106300
TU133248 lncRNA upstream 96363 22650500 ~ 22653658 (-) True G106509
TU133268 lncRNA upstream 142450 22696587 ~ 22696846 (-) True G106527
TU133286 lncRNA upstream 196345 22750482 ~ 22753616 (-) True AMCG00011399
TU133292 lncRNA upstream 205397 22759534 ~ 22761316 (-) True G106547
TU133348 lncRNA upstream 308471 22862608 ~ 22862952 (-) True G106587
AMCG00011386 mRNA downstream 1328209 21161329 ~ 21214630 (-) True AMCG00011386
AMCG00011382 mRNA downstream 1389037 21135426 ~ 21153802 (-) True AMCG00011382
AMCG00011383 mRNA downstream 1468063 21064143 ~ 21074776 (-) True AMCG00011383
AMCG00011385 mRNA downstream 1494590 21032802 ~ 21048249 (-) True AMCG00011385
AMCG00011384 mRNA downstream 1520902 21011871 ~ 21021937 (-) True AMCG00011384
AMCG00011393 mRNA upstream 9962 22564099 ~ 22600783 (-) True AMCG00011393
AMCG00011400 mRNA upstream 140004 22694141 ~ 22694827 (-) True AMCG00011400
AMCG00011398 mRNA upstream 184541 22738678 ~ 22743075 (-) True AMCG00011398
AMCG00011399 mRNA upstream 189293 22743430 ~ 22753092 (-) False AMCG00011399
AMCG00011401 mRNA upstream 226550 22780687 ~ 22790227 (-) True AMCG00011401
TU132729 other downstream 2674937 19865614 ~ 19867902 (-) True AMCG00011356
TU132572 other downstream 3129824 19410368 ~ 19413015 (-) False G105970
TU132457 other downstream 3437570 19102293 ~ 19105269 (-) True G105890
TU132382 other downstream 4351644 18184484 ~ 18191195 (-) True AMCG00011316
TU133362 other upstream 499179 23053316 ~ 23060966 (-) True AMCG00011409
TU133710 other upstream 2458068 25012205 ~ 25018332 (-) True AMCG00011445
TU134083 other upstream 3952806 26506943 ~ 26516507 (-) True AMCG00011485
TU134703 other upstream 7070947 29625084 ~ 29625387 (-) True G107713

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00015419 False 2059 mRNA 0.49 6 NC_007125.7 26467202 ~ 26482096 (-)
grasscarp (Ctenopharyngodon idella) CI01000000_16034357_16056363.mRNA True 3504 mRNA 0.52 17 CI01000000 16033898 ~ 16056594 (+)