RNA id: TU133220


Basic Information

Item Value
RNA id TU133220
length 371
lncRNA type sense_over
GC content 0.34
exon number 1
gene id AMCG00011391
representative False

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 22542649 ~ 22554137 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tttttatgtattagCGAGGTATGTTGGTCTGCAGAAACACAGAATACTTGTTTTAATAAGGTAAgtaacacaatgaaaagcaCTGATCTTTACTGTATAGCTTGCTCTTACAGTGTTAGGAACAGATAACATGAGTGAAGTTAATCAGTTAACAATGTGattaacagaaatacaaataggggaaagtattaaaattaaactgtttagAAGTTGAAATATTCAGTTGATTGTTACAAAATAAGGCATAGTGAGGTATCTCTATTTTCCCTTCTAGTGTCTTCTGCACAGCCCGAAGAATGTTCTTTTATAGAAGTGTACTTTTCCCTTTTAGAAACTGAGCAGTTTCCAATCGGGCATCACATATGCTGTcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133191 lncRNA downstream 614282 21926853 ~ 21928367 (-) True G106454
TU133190 lncRNA downstream 667523 21874812 ~ 21875126 (-) True G106453
TU133185 lncRNA downstream 742723 21795625 ~ 21799926 (-) True G106448
TU133063 lncRNA downstream 1589794 20951760 ~ 20952855 (-) True G106340
TU133011 lncRNA downstream 1630511 20911919 ~ 20912138 (-) True G106300
TU133248 lncRNA upstream 107481 22650500 ~ 22653658 (-) True G106509
TU133268 lncRNA upstream 153568 22696587 ~ 22696846 (-) True G106527
TU133286 lncRNA upstream 207463 22750482 ~ 22753616 (-) True AMCG00011399
TU133292 lncRNA upstream 216515 22759534 ~ 22761316 (-) True G106547
TU133348 lncRNA upstream 319589 22862608 ~ 22862952 (-) True G106587
AMCG00011386 mRNA downstream 1328019 21161329 ~ 21214630 (-) True AMCG00011386
AMCG00011382 mRNA downstream 1388847 21135426 ~ 21153802 (-) True AMCG00011382
AMCG00011383 mRNA downstream 1467873 21064143 ~ 21074776 (-) True AMCG00011383
AMCG00011385 mRNA downstream 1494400 21032802 ~ 21048249 (-) True AMCG00011385
AMCG00011384 mRNA downstream 1520712 21011871 ~ 21021937 (-) True AMCG00011384
AMCG00011393 mRNA upstream 21080 22564099 ~ 22600783 (-) True AMCG00011393
AMCG00011400 mRNA upstream 151122 22694141 ~ 22694827 (-) True AMCG00011400
AMCG00011398 mRNA upstream 195659 22738678 ~ 22743075 (-) True AMCG00011398
AMCG00011399 mRNA upstream 200411 22743430 ~ 22753092 (-) False AMCG00011399
AMCG00011401 mRNA upstream 237668 22780687 ~ 22790227 (-) True AMCG00011401
TU132729 other downstream 2674747 19865614 ~ 19867902 (-) True AMCG00011356
TU132572 other downstream 3129634 19410368 ~ 19413015 (-) False G105970
TU132457 other downstream 3437380 19102293 ~ 19105269 (-) True G105890
TU132382 other downstream 4351454 18184484 ~ 18191195 (-) True AMCG00011316
TU133362 other upstream 510297 23053316 ~ 23060966 (-) True AMCG00011409
TU133710 other upstream 2469186 25012205 ~ 25018332 (-) True AMCG00011445
TU134083 other upstream 3963924 26506943 ~ 26516507 (-) True AMCG00011485
TU134703 other upstream 7082065 29625084 ~ 29625387 (-) True G107713

Expression Profile