RNA id: AMCG00011398


Basic Information

Item Value
RNA id AMCG00011398
length 1865
RNA type mRNA
GC content 0.41
exon number 4
gene id AMCG00011398
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 22738678 ~ 22743075 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCCTGCAGCCAGTCCACCACAGCATTCATTTGCTCGTCTCGGCACGTCCCCGTCGTCGGTAGGGCCCGTTCGTCGCCCTTTGTGCGCGGCTCGGTGTGTGAGGCCAGCGGCGCGGAAGCGCTCCGCACTTGACAGGAGACTCAAGATGGCAGGGCGCGTCGGTCGAGCTGGACGTGTCCTGGGGGATGAGCCCCGTCCTGAGCGGTGCCAGCGGGTTTCATGTGCCCTGGTTCCGTCGGCAGAAATGAAAGACCCCAGCCGCAGCAGCAATACTCCCAGCATAATCAGCGATGACATGATCATCAATGGACAATCCCATGATGAGGATAACCCATTTGCAGAGTACATGTGGATGGAGAATGAAGAGGAGTTTAATAGACAGATGctggaagaagaagaggaacaTGAGTGGTTCATTCCTGCCCGAGATCTTCCACAAACCATTAACCAGCTGCAGGACCAGCTCAATGGATTGGTCATCGGCGATGGTGGTGTTCGAGAAGAACTGGTGGTCAACAGTAATTTGAACCCCAATGCAAAAGAATTTGTACCTGGTGTTAAGTACTGAATCGAGGCCTCTTGGTGGACGTAGCACAACCTCCACACTGTGAAGCCAGTATTAGATTAATTGTGGAAGCTTCTTTGTCACTGTGTTACACTTAATGCATTGCCAAAGTTTTCAGTTAGTCTTGCATGCTTAGTGCTGGGACTGTTATATCAACGAAAGTGTTTATGAGCTGaaagttcagtttttttgttttttatggggggtggggggtatgtTGAGACTGGAGTAAGAGGCACCGTTCAAACTAAATGGTGGTACTTGTACAAACAATGGGAAATTTGTTTCCCCTCTTATCTTGTTGTTGCCTTAATGTAAACCATTTCTCTGTAAACCCTTTTGTTAGTCTTGTGAAATTGCTTTGACTGCTGTAACATTTGAGATGTCCACTGTGTTTGTGAAGGCATCTCCTTAACATGCTCTGCCCCCATATATAATTCCAAATGATAATCACAAAAGCTGCAATAGAGTGGATTtgactttttgttatttttaatgtctagTTTTGGGATTCTTTAAAAGGGAAAGTAAAAACCTTCATGTTTTACAGAGGCTGGGATTACAAAAGTTATCTTTGTGACCATTGTAAGCTTTAAGGGAAACTCAGCTATTTCTTTACTGCCAGTTTGAGTATTTggagaatttaaaaacaaattgcttgAGTGAATATCATACCTGAAGTAAGTTTTTCAATACCTTGAAAATCATTACTTGATGTTCATTCTGTGATATTTGCTTCTcactattttgtgtattatgcgttttttggtttttaatttttgaagcaataagagatgcattttaatttttttttttttttttttatatattgttttgctcTGTTTGAATGCAGTACCtaatggtgggggggggtgggaaaTCGGGCTGTTTCTGCTAAAAAGGTGGAATTGGCATGACTTTCATAGTTTCTAGAAGTGGGAAAGGTGCAATGGAGACATTGTTGCATTAACTTGAGTGGTGCCTCTAACTTTATTtttgctctttatttttctcaatttttaaataaaactgctcAAAAAATATTAAGGATAAATCCGATTGAATCGTACATCTTGTATCCCTGGCTTTATTTTTTGAGCAGTTTATAGGAAACACTACATTGGGAAGTCTACAGcacagcattttcattttttaatcctttctctccctcttccctcccCACCCATCTATCAGAACGTGGTAGTTTACACTGCCACATATGTTGAATGTGaatagtgtttaaaaaaacaaaacgcaagaaaaaaaaaaaaaaagaaaatgaaaaatattgtaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133268 lncRNA downstream 41832 22696587 ~ 22696846 (-) True G106527
TU133248 lncRNA downstream 85020 22650500 ~ 22653658 (-) True G106509
TU133220 lncRNA downstream 195659 22542649 ~ 22543019 (-) False AMCG00011391
TU133191 lncRNA downstream 810311 21926853 ~ 21928367 (-) True G106454
TU133190 lncRNA downstream 863552 21874812 ~ 21875126 (-) True G106453
TU133286 lncRNA upstream 7407 22750482 ~ 22753616 (-) True AMCG00011399
TU133292 lncRNA upstream 16459 22759534 ~ 22761316 (-) True G106547
TU133348 lncRNA upstream 119533 22862608 ~ 22862952 (-) True G106587
TU133364 lncRNA upstream 351216 23094291 ~ 23097328 (-) True G106601
TU133367 lncRNA upstream 433405 23176480 ~ 23176756 (-) True G106603
AMCG00011400 mRNA downstream 43851 22694141 ~ 22694827 (-) True AMCG00011400
AMCG00011393 mRNA downstream 137895 22564099 ~ 22600783 (-) True AMCG00011393
AMCG00011391 mRNA downstream 184541 22542839 ~ 22554137 (-) True AMCG00011391
AMCG00011386 mRNA downstream 1524048 21161329 ~ 21214630 (-) True AMCG00011386
AMCG00011382 mRNA downstream 1584876 21135426 ~ 21153802 (-) True AMCG00011382
AMCG00011399 mRNA upstream 355 22743430 ~ 22753092 (-) False AMCG00011399
AMCG00011401 mRNA upstream 37612 22780687 ~ 22790227 (-) True AMCG00011401
AMCG00011408 mRNA upstream 196665 22939740 ~ 22949010 (-) True AMCG00011408
AMCG00011409 mRNA upstream 310238 23053313 ~ 23059457 (-) False AMCG00011409
AMCG00011412 mRNA upstream 597925 23341000 ~ 23345841 (-) True AMCG00011412
TU132729 other downstream 2870776 19865614 ~ 19867902 (-) True AMCG00011356
TU132572 other downstream 3325663 19410368 ~ 19413015 (-) False G105970
TU132457 other downstream 3633409 19102293 ~ 19105269 (-) True G105890
TU132382 other downstream 4547483 18184484 ~ 18191195 (-) True AMCG00011316
TU133362 other upstream 310241 23053316 ~ 23060966 (-) True AMCG00011409
TU133710 other upstream 2269130 25012205 ~ 25018332 (-) True AMCG00011445
TU134083 other upstream 3763868 26506943 ~ 26516507 (-) True AMCG00011485
TU134703 other upstream 6882009 29625084 ~ 29625387 (-) True G107713

Expression Profile