RNA id: AMCG00011399


Basic Information

Item Value
RNA id AMCG00011399
length 528
RNA type mRNA
GC content 0.55
exon number 5
gene id AMCG00011399
representative False

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 22743430 ~ 22753616 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCATCCCAGTCATCCCTGGAAGCTCTGTACGGGGGATCTGctctgtcaatcTGTTTGCACTGCTCTTTAACCCTGGCCAACACGCTGTTCCTCTTGGAGGTAATCTCCCTCAGCATGTACTGCTCATCCTCCTGCAGCCTCTTCTGGAGCTCTCTGAAGTTCTGTGATGTGAGCTTGGGAAGCTACAGCATGATTCCTGTGGCACCCGAGgacactgcaggacacacagacacagcattGGTCTTCCCTGCAGTAGAATTCCAGCGCCTTGCCGTGCTCAGCACACTTCCTGTTGGAGAAGGTGGTCAGCGGGTCAACCAGCCTGTGCTCCCTTGGGTTGAGCTTAGTGAGACCCCTCCTGCAGAAATGAAAGACCCCAGGCCTGGCAGCAAGCCCCCCAGCCCGGCCCACGACGAGGGGCTCAGTAATGGACAACCCCgcgatgaagatgatgatgatgacaaccCGTTCGCAGAGTACATGTGGATGGCCGATGAAGAGTTCAATTGCCAGaaacactTCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133268 lncRNA downstream 46584 22696587 ~ 22696846 (-) True G106527
TU133248 lncRNA downstream 89772 22650500 ~ 22653658 (-) True G106509
TU133220 lncRNA downstream 200411 22542649 ~ 22543019 (-) False AMCG00011391
TU133191 lncRNA downstream 815063 21926853 ~ 21928367 (-) True G106454
TU133190 lncRNA downstream 868304 21874812 ~ 21875126 (-) True G106453
TU133292 lncRNA upstream 6442 22759534 ~ 22761316 (-) True G106547
TU133348 lncRNA upstream 109516 22862608 ~ 22862952 (-) True G106587
TU133364 lncRNA upstream 341199 23094291 ~ 23097328 (-) True G106601
TU133367 lncRNA upstream 423388 23176480 ~ 23176756 (-) True G106603
TU133368 lncRNA upstream 423765 23176857 ~ 23177129 (-) True G106604
AMCG00011398 mRNA downstream 355 22738678 ~ 22743075 (-) True AMCG00011398
AMCG00011400 mRNA downstream 48603 22694141 ~ 22694827 (-) True AMCG00011400
AMCG00011393 mRNA downstream 142647 22564099 ~ 22600783 (-) True AMCG00011393
AMCG00011391 mRNA downstream 189293 22542839 ~ 22554137 (-) True AMCG00011391
AMCG00011386 mRNA downstream 1528800 21161329 ~ 21214630 (-) True AMCG00011386
AMCG00011401 mRNA upstream 27595 22780687 ~ 22790227 (-) True AMCG00011401
AMCG00011408 mRNA upstream 186648 22939740 ~ 22949010 (-) True AMCG00011408
AMCG00011409 mRNA upstream 300221 23053313 ~ 23059457 (-) False AMCG00011409
AMCG00011412 mRNA upstream 587908 23341000 ~ 23345841 (-) True AMCG00011412
AMCG00011413 mRNA upstream 597817 23350909 ~ 23361150 (-) True AMCG00011413
TU132729 other downstream 2875528 19865614 ~ 19867902 (-) True AMCG00011356
TU132572 other downstream 3330415 19410368 ~ 19413015 (-) False G105970
TU132457 other downstream 3638161 19102293 ~ 19105269 (-) True G105890
TU132382 other downstream 4552235 18184484 ~ 18191195 (-) True AMCG00011316
TU133362 other upstream 300224 23053316 ~ 23060966 (-) True AMCG00011409
TU133710 other upstream 2259113 25012205 ~ 25018332 (-) True AMCG00011445
TU134083 other upstream 3753851 26506943 ~ 26516507 (-) True AMCG00011485
TU134703 other upstream 6871992 29625084 ~ 29625387 (-) True G107713

Expression Profile