RNA id: AMCG00011400


Basic Information

Item Value
RNA id AMCG00011400
length 687
RNA type mRNA
GC content 0.48
exon number 1
gene id AMCG00011400
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 22694141 ~ 22694827 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTATGGCTCCATCCTCTGCCTCATGTTCATCAGTATTGACCGCTACATCTCACTGGTCCACCCCTTTTCGGCAAAGAGTTTCAGGAGCAAAAAGCTGGCCATCTCAGTTAGCATCATGACCTGGGCGATCGCAGTCGCTGCAATGGTGCCGTTTGTTGCAATAAAACAGTCTTACCACATCAACAACACCAGCATGATCACCTGCCATGATGCTCTACCAGCTGATCTGAAGACTAACCTCTTTGCCTACTACTTCACATCTCTGACTGCTTTTGGATTCATCCTCCCTTTCCTCTCCATCTTAATCTGCTATGTGTCCATAATATGCTCACTGTCTCGACAGGAGAAGCCTTTTGCCCGAACTGTGAAGATCTGTGCTATAGTACTGACTGTTTTCATGGTGTGCTACATTCCCAGTCATGTCATTCTGCTGCTCCATTACAACAGAGATCAAGTCCTCCAGGACAGTCGCCTGTACCGGCCCTACATGGTCAGCCTAGTGCTCAGCACTTTCAACAGCAGCATCGACCCTTTCCTGTACTTGTACGTGTCAGATGACTTCAGAGTCAAAGTGAGGGAGGCACTGCGTAGGGTTACAGCTCGAGGAAGCCTCCAGGGATCAGAAAGAACAGAGCAGAGCGTGTCATACAAGACTAAGTCTGAAGAATTGAGTCTAAAAGCTTAG

Function

GO:

id name namespace
GO:0051674 localization of cell biological_process
GO:0050900 leukocyte migration biological_process
GO:0016477 cell migration biological_process
GO:0002376 immune system process biological_process
GO:0048870 cell motility biological_process
GO:0030595 leukocyte chemotaxis biological_process
GO:0060326 cell chemotaxis biological_process

KEGG:

id description
ko04660 T cell receptor signaling pathway
ko04658 Th1 and Th2 cell differentiation
ko04659 Th17 cell differentiation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133248 lncRNA downstream 40483 22650500 ~ 22653658 (-) True G106509
TU133220 lncRNA downstream 151122 22542649 ~ 22543019 (-) False AMCG00011391
TU133191 lncRNA downstream 765774 21926853 ~ 21928367 (-) True G106454
TU133190 lncRNA downstream 819015 21874812 ~ 21875126 (-) True G106453
TU133185 lncRNA downstream 894215 21795625 ~ 21799926 (-) True G106448
TU133268 lncRNA upstream 1760 22696587 ~ 22696846 (-) True G106527
TU133286 lncRNA upstream 55655 22750482 ~ 22753616 (-) True AMCG00011399
TU133292 lncRNA upstream 64707 22759534 ~ 22761316 (-) True G106547
TU133348 lncRNA upstream 167781 22862608 ~ 22862952 (-) True G106587
TU133364 lncRNA upstream 399464 23094291 ~ 23097328 (-) True G106601
AMCG00011393 mRNA downstream 93358 22564099 ~ 22600783 (-) True AMCG00011393
AMCG00011391 mRNA downstream 140004 22542839 ~ 22554137 (-) True AMCG00011391
AMCG00011386 mRNA downstream 1479511 21161329 ~ 21214630 (-) True AMCG00011386
AMCG00011382 mRNA downstream 1540339 21135426 ~ 21153802 (-) True AMCG00011382
AMCG00011383 mRNA downstream 1619365 21064143 ~ 21074776 (-) True AMCG00011383
AMCG00011398 mRNA upstream 43851 22738678 ~ 22743075 (-) True AMCG00011398
AMCG00011399 mRNA upstream 48603 22743430 ~ 22753092 (-) False AMCG00011399
AMCG00011401 mRNA upstream 85860 22780687 ~ 22790227 (-) True AMCG00011401
AMCG00011408 mRNA upstream 244913 22939740 ~ 22949010 (-) True AMCG00011408
AMCG00011409 mRNA upstream 358486 23053313 ~ 23059457 (-) False AMCG00011409
TU132729 other downstream 2826239 19865614 ~ 19867902 (-) True AMCG00011356
TU132572 other downstream 3281126 19410368 ~ 19413015 (-) False G105970
TU132457 other downstream 3588872 19102293 ~ 19105269 (-) True G105890
TU132382 other downstream 4502946 18184484 ~ 18191195 (-) True AMCG00011316
TU133362 other upstream 358489 23053316 ~ 23060966 (-) True AMCG00011409
TU133710 other upstream 2317378 25012205 ~ 25018332 (-) True AMCG00011445
TU134083 other upstream 3812116 26506943 ~ 26516507 (-) True AMCG00011485
TU134703 other upstream 6930257 29625084 ~ 29625387 (-) True G107713

Expression Profile