RNA id: AMCG00011408


Basic Information

Item Value
RNA id AMCG00011408
length 360
RNA type mRNA
GC content 0.56
exon number 2
gene id AMCG00011408
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 22939740 ~ 22949010 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGGAAGATGCTTggtggagaggaggagaaggaccCCGATGCCcagaaaaaggaagaagaaagacaGGAGGCTCTGAgacagcaggaggaagagaggaaggcCAAGCACGCCCGCATGGAGGCTGAGAGGGAGAAAGTACGACAGACCATCCGTGACAAGTATGGCCTGAAGaagaaggaagagaaagaggcCGAGGAGAAGGCCGCGATGGAGCAGCCGTGCGAGGGCTCATTGACACGCCCCAAGAAAGCCATTCCTGCCGGCTGTGGagacgaggacgaggaggaagaggaaagcATCCTGGACACTGTGCTCAAGTTCCTGCCAGGGCCTCTGCAAGACATGTTCAAGAAGTAA

Function

GO:

id name namespace
GO:0006836 neurotransmitter transport biological_process
GO:0019905 syntaxin binding molecular_function

KEGG:

id description
K15294 CPLX1_2; complexin-1/2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133348 lncRNA downstream 76788 22862608 ~ 22862952 (-) True G106587
TU133292 lncRNA downstream 178424 22759534 ~ 22761316 (-) True G106547
TU133286 lncRNA downstream 186124 22750482 ~ 22753616 (-) True AMCG00011399
TU133268 lncRNA downstream 242894 22696587 ~ 22696846 (-) True G106527
TU133248 lncRNA downstream 286082 22650500 ~ 22653658 (-) True G106509
TU133364 lncRNA upstream 145281 23094291 ~ 23097328 (-) True G106601
TU133367 lncRNA upstream 227470 23176480 ~ 23176756 (-) True G106603
TU133368 lncRNA upstream 227847 23176857 ~ 23177129 (-) True G106604
TU133370 lncRNA upstream 228218 23177228 ~ 23177579 (-) True G106606
TU133416 lncRNA upstream 447503 23396513 ~ 23399092 (-) False AMCG00011414
AMCG00011401 mRNA downstream 149513 22780687 ~ 22790227 (-) True AMCG00011401
AMCG00011399 mRNA downstream 186648 22743430 ~ 22753092 (-) False AMCG00011399
AMCG00011398 mRNA downstream 196665 22738678 ~ 22743075 (-) True AMCG00011398
AMCG00011400 mRNA downstream 244913 22694141 ~ 22694827 (-) True AMCG00011400
AMCG00011393 mRNA downstream 338957 22564099 ~ 22600783 (-) True AMCG00011393
AMCG00011409 mRNA upstream 104303 23053313 ~ 23059457 (-) False AMCG00011409
AMCG00011412 mRNA upstream 391990 23341000 ~ 23345841 (-) True AMCG00011412
AMCG00011413 mRNA upstream 401899 23350909 ~ 23361150 (-) True AMCG00011413
AMCG00011414 mRNA upstream 444094 23393104 ~ 23489642 (-) True AMCG00011414
AMCG00011415 mRNA upstream 549816 23498826 ~ 23508364 (-) True AMCG00011415
TU132729 other downstream 3071838 19865614 ~ 19867902 (-) True AMCG00011356
TU132572 other downstream 3526725 19410368 ~ 19413015 (-) False G105970
TU132457 other downstream 3834471 19102293 ~ 19105269 (-) True G105890
TU132382 other downstream 4748545 18184484 ~ 18191195 (-) True AMCG00011316
TU133362 other upstream 104306 23053316 ~ 23060966 (-) True AMCG00011409
TU133710 other upstream 2063195 25012205 ~ 25018332 (-) True AMCG00011445
TU134083 other upstream 3557933 26506943 ~ 26516507 (-) True AMCG00011485
TU134703 other upstream 6676074 29625084 ~ 29625387 (-) True G107713

Expression Profile