RNA id: AMCG00011409


Basic Information

Item Value
RNA id AMCG00011409
length 1541
RNA type mRNA
GC content 0.39
exon number 5
gene id AMCG00011409
representative False

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 23053313 ~ 23060966 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACACGGTTACAAGCTGGCCAAGGATATAAAAACACCTTCCACTGCATCCTTAAAATCtaccaaaaagaaaatGTTTCTGGGTTCTTCAAAGGCCTGTCTTTCCCACTGGCCAGCATTACTCTCTATAACTCGGTGGTATTTGGCGTCTTCAGCAACACACAGCGGCTTATTAGCCAGATTCGCTATGGCGACGGGAGGCACCCTTCTGATATGTTGGACCTCACCCTGGCCAGCATGGTGACTGGCTTCATTTCTGTAGGGTTCGGGGCCCCGGTGGATTTGGTGAAAATACGGCTGCAGATGCAGACCCAGCCTGTTCTCGCAGAGAACTTGAACCTTGCTGGGGAGGTGCACCTCCGCACAGTTGGGATCCATCAGCAGGCACTGTACAGGGGACCTATTCACTGCATCAGCAGCATCCTACAGAACGAAGGGGTCCATGGACTTTACCGAGGAACTGGGGCCATGATATTCTTCCGCGGGGCTACAGTGAATGTTGTCCGTGGATTTCCCATGAGTGCTACGATGTTCCTTGGCTACGAACTCTCACTGAAGTTCTTCAGAGGTCTGTAAGCTGGGGTTATCCTCCCTGCGCCCCCATTGACATCACTCTTCTTCATGAGTGACATTTTCCCAGCATGCCAACTGTTTTTGTACATCTTCAGGAGTTTCCTGGACTATTGTGGATCATTTCACTTGTCATTtcacttgttattttcttatattaAGAAAGCACTTGTTTAAATTAGACAAAGACCAACATGTTTATAATGGTTAAAATGCCTGGATATACAgttacaaaaaagaaatgaagtAAATATATGATTACATTAATTGTTTTGCAAGAGCGTTCTTTATGAATGAAAAGGTAAAACTATATGAATATGAAAGCATGGCAATCACCCTGTACaaccaaaataatttaaaatatcttgtttaaataaaatgtgtgaatgCATATCAGTATTACTGTATTGATAGCactttataacaaaaaaaatagaataaacaatttgaatacttaactatatatattattttgtttaaggaaagatattttattaaatatttgtacatatgTTGCTGATCTTCCcagatttattaataataaagcatataTTGCTGCACTGTGTGTTATGTTAAAATTGCTAATTCTGAAATAGCAATGGGAAGCCTTAGCATTATTGCCTTTAAGCCAGGCTGTGTTGAGTATCTCTTGTGGTTTTAAAGAGCACGCTCTAATCTGAGAATAAGGTTCAAAATTGAAATTCTGATCAGAGAATGCAGATCAGCAGGGGGAGTGTATGACCGTGGAAAAGAGAGACTATCGTCCATATGCGCCAGACCATCTGTACTAGCTCTTACCACACTACAGCTCTGAATGTAGGCattgatattatttaaaaagtattttgttttggaaagggATTTCGATTTTTCTTTAACAACAGTATTGGTTGTCTTTTACTTTctttggcattttgttttttacagctATGTAAATGTTACctaataaaatcaatgtttgttcattttaa

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133348 lncRNA downstream 190361 22862608 ~ 22862952 (-) True G106587
TU133292 lncRNA downstream 291997 22759534 ~ 22761316 (-) True G106547
TU133286 lncRNA downstream 299697 22750482 ~ 22753616 (-) True AMCG00011399
TU133268 lncRNA downstream 356467 22696587 ~ 22696846 (-) True G106527
TU133248 lncRNA downstream 399655 22650500 ~ 22653658 (-) True G106509
TU133364 lncRNA upstream 34834 23094291 ~ 23097328 (-) True G106601
TU133367 lncRNA upstream 117023 23176480 ~ 23176756 (-) True G106603
TU133368 lncRNA upstream 117400 23176857 ~ 23177129 (-) True G106604
TU133370 lncRNA upstream 117771 23177228 ~ 23177579 (-) True G106606
TU133416 lncRNA upstream 337056 23396513 ~ 23399092 (-) False AMCG00011414
AMCG00011408 mRNA downstream 104303 22939740 ~ 22949010 (-) True AMCG00011408
AMCG00011401 mRNA downstream 263086 22780687 ~ 22790227 (-) True AMCG00011401
AMCG00011399 mRNA downstream 300221 22743430 ~ 22753092 (-) False AMCG00011399
AMCG00011398 mRNA downstream 310238 22738678 ~ 22743075 (-) True AMCG00011398
AMCG00011400 mRNA downstream 358486 22694141 ~ 22694827 (-) True AMCG00011400
AMCG00011412 mRNA upstream 281543 23341000 ~ 23345841 (-) True AMCG00011412
AMCG00011413 mRNA upstream 291452 23350909 ~ 23361150 (-) True AMCG00011413
AMCG00011414 mRNA upstream 333647 23393104 ~ 23489642 (-) True AMCG00011414
AMCG00011415 mRNA upstream 439369 23498826 ~ 23508364 (-) True AMCG00011415
AMCG00011421 mRNA upstream 459344 23518801 ~ 23561929 (-) True AMCG00011421
TU132729 other downstream 3185411 19865614 ~ 19867902 (-) True AMCG00011356
TU132572 other downstream 3640298 19410368 ~ 19413015 (-) False G105970
TU132457 other downstream 3948044 19102293 ~ 19105269 (-) True G105890
TU132382 other downstream 4862118 18184484 ~ 18191195 (-) True AMCG00011316
TU133710 other upstream 1952748 25012205 ~ 25018332 (-) True AMCG00011445
TU134083 other upstream 3447486 26506943 ~ 26516507 (-) True AMCG00011485
TU134703 other upstream 6565627 29625084 ~ 29625387 (-) True G107713

Expression Profile