RNA id: TU133362


Basic Information

Item Value
RNA id TU133362
length 1830
RNA type TUCP
GC content 0.39
exon number 6
gene id AMCG00011409
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 23053313 ~ 23060966 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGGCTGGCGAGGCACTGTTGGCAGGTTATTCCTGCAATGTTGTGAAAACTCACTGATCATAGATGATCTTCAGACAGCAATACCTGAGCACTATTCAATCTCTGCCCCTCTCGGTGTGTGCCATAGCTAGGTGGCATCAATGATCTGATGTATTAGACTAAAAGGTCCTTTTTAAAAAGTTGGATTTGCAGCACGAAATGAACTGCTTTGATATAGATGACTTTCTAGCGGGATGGATAGGGGgaGCTTCCAGTGTTATTGTGGGACATCCACTTGATACTGTAAAGACACGGTTACAAGCTGGCCAAGGATATAAAAACACCTTCCACTGCATCCTTAAAATCtaccaaaaagaaaatAGAACTTGAACCTTGCTGGGGAGGTGCACCTCCGCACAGTTGGGATCCATCAGCAGGCACTGTACAGGGGACCTATTCACTGCATCAGCAGCATCCTACAGAACGAAGGGGTCCATGGACTTTACCGAGGAACTGGGGCCATGGTCATTAGGGACGTCCCAGGATATGCCCTGTACTTCATTCCTTACACCCTGCTCTGCAGCTGGATGACACCAGAGGGACACGCTGCGCCTCACCCTTGTTCCATTTGGCTTGCAGGTGGAATAGCAGGTTCCATCTCCTGGTTTACTGCCACACCAGCAGACGTATTGAAGAGTCGACTTCAAGCTGATGCACTTCACCAAAGAAAGTATAAAGGCATTGCCCACTGTATTTTACAGAGTTACAAGACAGAAGGCCTGCAGATATTCTTCCGCGGGGCTACAGTGAATGTTGTCCGTGGATTTCCCATGAGTGCTACGATGTTCCTTGGCTACGAACTCTCACTGAAGTTCTTCAGAGGTCTGTAAGCTGGGGTTATCCTCCCTGCGCCCCCATTGACATCACTCTTCTTCATGAGTGACATTTTCCCAGCATGCCAACTGTTTTTGTACATCTTCAGGAGTTTCCTGGACTATTGTGGATCATTTCACTTGTCATTtcacttgttattttcttatattaAGAAAGCACTTGTTTAAATTAGACAAAGACCAACATGTTTATAATGGTTAAAATGCCTGGATATACAgttacaaaaaagaaatgaagtAAATATATGATTACATTAATTGTTTTGCAAGAGCGTTCTTTATGAATGAAAAGGTAAAACTATATGAATATGAAAGCATGGCAATCACCCTGTACaaccaaaataatttaaaatatcttgtttaaataaaatgtgtgaatgCATATCAGTATTACTGTATTGATAGCactttataacaaaaaaaatagaataaacaatttgaatacttaactatatatattattttgtttaaggaaagatattttattaaatatttgtacatatgTTGCTGATCTTCCcagatttattaataataaagcatataTTGCTGCACTGTGTGTTATGTTAAAATTGCTAATTCTGAAATAGCAATGGGAAGCCTTAGCATTATTGCCTTTAAGCCAGGCTGTGTTGAGTATCTCTTGTGGTTTTAAAGAGCACGCTCTAATCTGAGAATAAGGTTCAAAATTGAAATTCTGATCAGAGAATGCAGATCAGCAGGGGGAGTGTATGACCGTGGAAAAGAGAGACTATCGTCCATATGCGCCAGACCATCTGTACTAGCTCTTACCACACTACAGCTCTGAATGTAGGCattgatattatttaaaaagtattttgttttggaaagggATTTCGATTTTTCTTTAACAACAGTATTGGTTGTCTTTTACTTTctttggcattttgttttttacagctATGTAAATGTTACctaataaaatcaatgtttgttcattt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133348 lncRNA downstream 190364 22862608 ~ 22862952 (-) True G106587
TU133292 lncRNA downstream 292000 22759534 ~ 22761316 (-) True G106547
TU133286 lncRNA downstream 299700 22750482 ~ 22753616 (-) True AMCG00011399
TU133268 lncRNA downstream 356470 22696587 ~ 22696846 (-) True G106527
TU133248 lncRNA downstream 399658 22650500 ~ 22653658 (-) True G106509
TU133364 lncRNA upstream 33325 23094291 ~ 23097328 (-) True G106601
TU133367 lncRNA upstream 115514 23176480 ~ 23176756 (-) True G106603
TU133368 lncRNA upstream 115891 23176857 ~ 23177129 (-) True G106604
TU133370 lncRNA upstream 116262 23177228 ~ 23177579 (-) True G106606
TU133416 lncRNA upstream 335547 23396513 ~ 23399092 (-) False AMCG00011414
AMCG00011408 mRNA downstream 104306 22939740 ~ 22949010 (-) True AMCG00011408
AMCG00011401 mRNA downstream 263089 22780687 ~ 22790227 (-) True AMCG00011401
AMCG00011399 mRNA downstream 300224 22743430 ~ 22753092 (-) False AMCG00011399
AMCG00011398 mRNA downstream 310241 22738678 ~ 22743075 (-) True AMCG00011398
AMCG00011400 mRNA downstream 358489 22694141 ~ 22694827 (-) True AMCG00011400
AMCG00011412 mRNA upstream 280034 23341000 ~ 23345841 (-) True AMCG00011412
AMCG00011413 mRNA upstream 289943 23350909 ~ 23361150 (-) True AMCG00011413
AMCG00011414 mRNA upstream 332138 23393104 ~ 23489642 (-) True AMCG00011414
AMCG00011415 mRNA upstream 437860 23498826 ~ 23508364 (-) True AMCG00011415
AMCG00011421 mRNA upstream 457835 23518801 ~ 23561929 (-) True AMCG00011421
TU132729 other downstream 3185414 19865614 ~ 19867902 (-) True AMCG00011356
TU132572 other downstream 3640301 19410368 ~ 19413015 (-) False G105970
TU132457 other downstream 3948047 19102293 ~ 19105269 (-) True G105890
TU132382 other downstream 4862121 18184484 ~ 18191195 (-) True AMCG00011316
TU132383 other downstream 4862121 18184484 ~ 18191195 (-) False AMCG00011316
TU133710 other upstream 1951239 25012205 ~ 25018332 (-) True AMCG00011445
TU134083 other upstream 3445977 26506943 ~ 26516507 (-) True AMCG00011485
TU134703 other upstream 6564118 29625084 ~ 29625387 (-) True G107713

Expression Profile