RNA id: TU133416


Basic Information

Item Value
RNA id TU133416
length 627
lncRNA type sense_over
GC content 0.43
exon number 4
gene id AMCG00011414
representative False

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 23393104 ~ 23489642 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTCCGGCTGAGGTCACGCACATGACAAACGTGCTATAGTCCTGTGTTTACAGTGGGGGGGTTGCAGAGGCTGCGTATAGGAACAGATTGCACTGCTTCTGTGTAATGAAACTTTGCTGATACTGACAGTCGAGTAGAAGAGGTTGCACATTCTCCAAAGGACTACGAAACATGACGAAGCACGAATTCTTTGTGGACATGACGTGTGAGGGCTGCTCCGGCGCCGTCACTCGGGTTCTCCGCAAACTGCAAGATGTCAAGTTTGACATTGACCTGCCCAATAAAAAGGTTTTTGTCGAGTCGGAGCAGAGTTCAGAAGTTCTTCTTGAAACACTAAAGAAAACGGGGAAAACAGTTACTTATATTGGTGCAAAATGAAGAACTGTCCAAAAACAAGGTAACATGACCTTCCTGGTGATGTGCAGGAAAATTAAATGGTTGGGCTTCCTGTATACAGCATATTATATAAGCTGTCTGGAAACCATGCAGTTCTGACTTCATCACTGCCATTAGGTGAACTACGGGGGACCATTTAATTCTGCTTTCAAACCGCTTTAGTTCTCTCGATCTGCTTTCATGTGTGTGatctatattgtttaaaaaataaagtaaactaaTGAAAAACTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133370 lncRNA downstream 218934 23177228 ~ 23177579 (-) True G106606
TU133368 lncRNA downstream 219384 23176857 ~ 23177129 (-) True G106604
TU133367 lncRNA downstream 219757 23176480 ~ 23176756 (-) True G106603
TU133364 lncRNA downstream 299185 23094291 ~ 23097328 (-) True G106601
TU133348 lncRNA downstream 533561 22862608 ~ 22862952 (-) True G106587
TU133432 lncRNA upstream 118286 23517378 ~ 23517803 (-) True G106665
TU133456 lncRNA upstream 192009 23591101 ~ 23591309 (-) True G106682
TU133511 lncRNA upstream 396588 23795680 ~ 23797219 (-) True G106723
TU133519 lncRNA upstream 414765 23813857 ~ 23817543 (-) True AMCG00011428
TU133521 lncRNA upstream 430206 23829298 ~ 23834974 (-) True AMCG00011427
AMCG00011413 mRNA downstream 35363 23350909 ~ 23361150 (-) True AMCG00011413
AMCG00011412 mRNA downstream 50672 23341000 ~ 23345841 (-) True AMCG00011412
AMCG00011409 mRNA downstream 337056 23053313 ~ 23059457 (-) False AMCG00011409
AMCG00011408 mRNA downstream 447503 22939740 ~ 22949010 (-) True AMCG00011408
AMCG00011401 mRNA downstream 606286 22780687 ~ 22790227 (-) True AMCG00011401
AMCG00011415 mRNA upstream 99734 23498826 ~ 23508364 (-) True AMCG00011415
AMCG00011421 mRNA upstream 119709 23518801 ~ 23561929 (-) True AMCG00011421
AMCG00011424 mRNA upstream 211637 23610729 ~ 23611511 (-) True AMCG00011424
AMCG00011423 mRNA upstream 339684 23738776 ~ 23741793 (-) True AMCG00011423
AMCG00011422 mRNA upstream 343986 23743078 ~ 23749052 (-) True AMCG00011422
TU133362 other downstream 335547 23053316 ~ 23060966 (-) True AMCG00011409
TU132729 other downstream 3528611 19865614 ~ 19867902 (-) True AMCG00011356
TU132572 other downstream 3983498 19410368 ~ 19413015 (-) False G105970
TU132457 other downstream 4291244 19102293 ~ 19105269 (-) True G105890
TU132383 other downstream 5205318 18184484 ~ 18191195 (-) False AMCG00011316
TU133710 other upstream 1613113 25012205 ~ 25018332 (-) True AMCG00011445
TU134083 other upstream 3107851 26506943 ~ 26516507 (-) True AMCG00011485
TU134703 other upstream 6225992 29625084 ~ 29625387 (-) True G107713

Expression Profile