RNA id: AMCG00011422


Basic Information

Item Value
RNA id AMCG00011422
length 3032
RNA type mRNA
GC content 0.42
exon number 11
gene id AMCG00011422
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 23743078 ~ 23749052 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GACACAATGGCGTGTGACAAAGTGGTCTCATTCATCCGAGGCCTCGCTCGCAGGAAGCCCCTGGACCCCGAAGGCGAGGTGTCCAACTTCCGCCGCTGTCTGACCACCCTCGACTTGGTGGCACTGGGGGTGGGCAGCACGCTGGGAGCAGGAGTGTACGTTCTGTCTGGAGAAGTGGCCAGGGCAGTCGCTGGACCGAGCATCATCATCTCCTTCTTTGTCGCGGCCCTTGCCTCCATCTTCGCTGGGCTGTGCTATGCGGAGTTCGGTGCCAGGGTCCCCAAGACGGGTTCTGCTTACTTGTACAGCTACGTGACAGTTGGAGAAGTGTGGGCCTTCATCACTGGCTGGAATTTATTGCTCTCCTATGTGATAGGCAAGcagactgtttGTACCTCAAGTGTGGCTAGAGCATGGAGTGGGACATTTGATGACCTCATAGGCAATGTGATTGCTAATTATTTAGGCAAACATGCAGCCATGGGATTGCCTGGCCTTGCTGCTTACCCTGATTTTTTTGCAGCCGGTCTGATCATGCTGCTAGCAGGACTCCTTGCATTTGGAGTAAAAGAGTCAACAACAGTCAATAAGGTTTTCACAGGGATTAATATTCTGGTACTGTTGTTTGTCATTATTTCTGGATTCATCAAAGGCAATCTTGACAACTGGTACATCAGTGAAGAAACAATTCTGAATGCTACAGCACAGGCTGAAAACCTGTCTTCTGCTGCCAATGTGACGAGTGAGTTTGGGATTGGGGGATTTTTTCCGTATGGATTTGAAGGAACGGTAGCAGGCGCTGCAACCTGTTTCTATGCTTTTGTGGGATTTGACTGCATTGCAACCACAGGGGAGGAAGTGAAGAACCCTCAGAAGTCCATTCCTCTGGGAATTGTCATCTCCCTGTTGATCTGCTTCCTGGCCTATTTTGGTGTCTCAGCTGCACTGACCCTCATGATGCCTTACTACTTACTCAACGTCCATAGTCCCCTGCCTGTGGCCTTCACATACATAGGGTGGAATGCAGCCAAGTATGTTGTGGCTGTGGGCTCTCTGTGTGCTCTCTCTACCAGTCTCCTGGGCTCCATGTTTCCCATGCCTAGGGTCATTTTTGCTATGGCAAGAGATGGGCTGCTCTTCAAAACTCTGCGTAAGGTCAGTTCACGCCAGAGTCCTGTTGTAGCCACACTCGCCTCTGGAACTGTGGCAGCTATCATGGCCCTTCTATTTGACCTGAAAGCACTGGTTGACATGATGTCCATTGGCACTCTCTTTGCGTATACTCTGGTGGCTCTTTGCATTCTCATCCTGAGGTACCAGCCAGATTCAAATGAAGACAATTCAGACGACATCCAGAAACCAGAAAGCAGCTCCAAGTTTGCCTTTCTAAATCCACCTTCCAACCCGACCGCAAAGACCTCAACCATTGTGTCCAGCTGTGCACTATTAATAgTTCTCTTGGTAATTCTTTTGAGTGTCTTATTGACAAAAGGGATGCCATCCTTACTCCAAAGGGAAGCATGGAGCCTGGCTTGTTTGGTTATAATCCTTGtgataattacaattattgtcGTGATCATTTGGAGACAGCCCCAGTGTAAAACCAAAGCTGCATTCATGGTTCCCTTCTTGCCACTGCTCCCTGTGGTGAGTGTCTTTGTGAACATTTACCTGATGATTCAGTTAGGACCAGACACCTGGATCCGCTACGCTGTGTGGATGGCAGTGGGCTTCCTGATCTATTTCAGCTATGGTGTCCGGCACAGCGTCCAGAGGAAACGGCTCCGTATGCCACAGAATCAGATCGTTATTCAGACTATTGACAGCACAATGGAGGGAGATTGTGTGAAGGCTCCTGAACCAGATGAGGATGGGAATCAGAAAGCCCATGTTTCTTGATGAAGATGAAGAGGCAGCTGTGGAGACTTCTTCCCCTTTCACATAAGCTTTAAAAACTCAAAATTGAAATTACAGTTTTCGGAAAACCACAGTGAGGTGTTTGAAAATGACATTGATAATGAAAACTACATTCACCgtacattcaaacaaaaaaagcaaactaGGATATACATTGCACTGTGAATTTGTAAGCAAATGTGAAATGGATTTTTATACTGGGTTTATTGGAGGGATCTTAACAATGTTTACAACTAATGAAAAaatgtctgtatatttatagaactgtagatgttttataatgtttgaaAAAACATAAACTGCAGTagataatgatatatatatatacatatatatatatatatatatatatatatgaaagcaGGGGAATAATGCATAgcacttatgttttgtttttgtatcacATGCTTTTACAGCATCAGTGACACATTTTGATCAGGGCTGAGAACATGCAGTGTAGTCAGGCACATGCAGTGCTGTTTCAGATCTTAATTAGGGCAAAGATACTAACTGCATCAGAGCACAAAGGATAGACTTGctaattgttaaaaaatatggaTATTTACACCAAAGAAtttgatgggggggggggttaaatatAGTAAATAGGAGGGGTTtaatcacaaatatatacatttaagttaaaaaaaatatacaatgtttgaaagaaaagattaaactaataatatattaaatcaacCTGTGGAATACACAATTTTGATCTAGTTTTAAAgctttttacattacattcccTTTGTAAAAACGATTATTTCAGAATCACAATATTATCcatatatgtgaaaataatcaatacatttcaatgcgTCTGGTTTTGTGGGATAAACACACTTGTGTTATTTCCACCATTACTCTAAACTACTGAGCCAACTAAGCCTAGCAACCCCAGTTAATGtatcatacattaaaaatgttttccttttatatcTGGAAACTAatcaagattttatttaattctattcagataatgcaacaaaatatattcactttGTGGGTCTCTAACCTTTCCAGTTTTCAACACatcttgaaaaatatttttttcttatatcaaTTAGACTAACTAATGcctcaataaaaataataacaacatattacaa

Function

GO: NA

KEGG:

id description
K13864 SLC7A2, ATRC2; solute carrier family 7 (cationic amino acid transporter), member 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133456 lncRNA downstream 151769 23591101 ~ 23591309 (-) True G106682
TU133432 lncRNA downstream 225275 23517378 ~ 23517803 (-) True G106665
TU133416 lncRNA downstream 343986 23396513 ~ 23399092 (-) False AMCG00011414
TU133370 lncRNA downstream 565499 23177228 ~ 23177579 (-) True G106606
TU133368 lncRNA downstream 565949 23176857 ~ 23177129 (-) True G106604
TU133511 lncRNA upstream 46628 23795680 ~ 23797219 (-) True G106723
TU133519 lncRNA upstream 64805 23813857 ~ 23817543 (-) True AMCG00011428
TU133521 lncRNA upstream 80246 23829298 ~ 23834974 (-) True AMCG00011427
TU133612 lncRNA upstream 832904 24581956 ~ 24582174 (-) True G106817
TU133665 lncRNA upstream 1167112 24916164 ~ 24919197 (-) True G106862
AMCG00011423 mRNA downstream 1285 23738776 ~ 23741793 (-) True AMCG00011423
AMCG00011424 mRNA downstream 131567 23610729 ~ 23611511 (-) True AMCG00011424
AMCG00011421 mRNA downstream 181149 23518801 ~ 23561929 (-) True AMCG00011421
AMCG00011415 mRNA downstream 234714 23498826 ~ 23508364 (-) True AMCG00011415
AMCG00011414 mRNA downstream 253436 23393104 ~ 23489642 (-) True AMCG00011414
AMCG00011428 mRNA upstream 65461 23814513 ~ 23815783 (-) False AMCG00011428
AMCG00011427 mRNA upstream 80245 23829297 ~ 23835074 (-) False AMCG00011427
AMCG00011431 mRNA upstream 217067 23966119 ~ 23979763 (-) True AMCG00011431
AMCG00011432 mRNA upstream 245086 23994138 ~ 24000458 (-) True AMCG00011432
AMCG00011433 mRNA upstream 340220 24089272 ~ 24102925 (-) True AMCG00011433
TU133362 other downstream 682112 23053316 ~ 23060966 (-) True AMCG00011409
TU132729 other downstream 3875176 19865614 ~ 19867902 (-) True AMCG00011356
TU132572 other downstream 4330063 19410368 ~ 19413015 (-) False G105970
TU132457 other downstream 4637809 19102293 ~ 19105269 (-) True G105890
TU132383 other downstream 5551883 18184484 ~ 18191195 (-) False AMCG00011316
TU133710 other upstream 1263153 25012205 ~ 25018332 (-) True AMCG00011445
TU134083 other upstream 2757891 26506943 ~ 26516507 (-) True AMCG00011485
TU134703 other upstream 5876032 29625084 ~ 29625387 (-) True G107713

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000000_10106854_10121986.mRNA True 3208 mRNA 0.44 12 CI01000000 10106657 ~ 10123017 (-)