RNA id: AMCG00011423


Basic Information

Item Value
RNA id AMCG00011423
length 969
RNA type mRNA
GC content 0.51
exon number 5
gene id AMCG00011423
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 23738776 ~ 23741793 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGGCTGGGTCTAATTTTCAGCATATTGATTGTCACAGTTTTGCTGCTGGAATTCGGGAACAGCgaaaaaaatgaagatatgGAGACAAAGGcgtcagaaaagaaaaaacaaaaagggaaagcTAAACTTGGAAAGGTTGGGGCAAAGAAGGCCAAAGCCCCAACGACAAAACTGAAGCGTAAAAAAACCACTGCAAAACCAACCCCGCCCCTTCCTGTTGAGACAGTCCTAACGCAGGTGCTGGAGAGGGGGAAGTTCCAGAGAGTGGGTGATACTGTGACTGTGCACTCCGGCGACACCCTGGAGCTCCGATGCAAGGGCAAACCTGTCCAATGGACTGTCCCTTACTACTTGGAGGAAGAGGATGAAGGCAGACTCAGGACTACTCAGCATGAGAAGTATGGCTCCCTGATTTTGGTGAACTCCACGGGGGCGGACACTGGAGAGTACACTTGTTACCCCATGTACTGTGAGGGCACAGACTGCAGGAGGGAGTACGACAGAGCCGCCAGAGTCTTTGTCTTCTTTCCAGATCCCCAGGAGCTGTTTGTCCCATCAGCAGACTATTATGAAGTAGTGCAGCTGCGCACAAACCGGCCGACGACACTGCCCTGTCAGGTGACTTCCCCGCTGGCCAAGGTGACTCTGCATCGCGAGTTTCCCCCTGATGAAGTGAAAGTGGACGGGGTTGAGATATCCTTCAACATAAAGAAGGGCTTCACCATCCATCGGCCAAGAACTCATCATGCGGGCTCACTTTACTGCATGGCAAGCTACCAGGGCCTTCGCCAGATATCCACCAAATACATGCTCATTTATGTGAACTatcCCGTCTCTCCACCATCTCCTGTtatccaggcctcctccagctcggTCCACATGGGGGAGAATTTACAGGTGACCTGCTCAGTACAGGGGGAGGTTGATGTTGCTATTGATTTCACTTGGGAATACCCAGGGCAAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133456 lncRNA downstream 147467 23591101 ~ 23591309 (-) True G106682
TU133432 lncRNA downstream 220973 23517378 ~ 23517803 (-) True G106665
TU133416 lncRNA downstream 339684 23396513 ~ 23399092 (-) False AMCG00011414
TU133370 lncRNA downstream 561197 23177228 ~ 23177579 (-) True G106606
TU133368 lncRNA downstream 561647 23176857 ~ 23177129 (-) True G106604
TU133511 lncRNA upstream 53887 23795680 ~ 23797219 (-) True G106723
TU133519 lncRNA upstream 72064 23813857 ~ 23817543 (-) True AMCG00011428
TU133521 lncRNA upstream 87505 23829298 ~ 23834974 (-) True AMCG00011427
TU133612 lncRNA upstream 840163 24581956 ~ 24582174 (-) True G106817
TU133665 lncRNA upstream 1174371 24916164 ~ 24919197 (-) True G106862
AMCG00011424 mRNA downstream 127265 23610729 ~ 23611511 (-) True AMCG00011424
AMCG00011421 mRNA downstream 176847 23518801 ~ 23561929 (-) True AMCG00011421
AMCG00011415 mRNA downstream 230412 23498826 ~ 23508364 (-) True AMCG00011415
AMCG00011414 mRNA downstream 249134 23393104 ~ 23489642 (-) True AMCG00011414
AMCG00011413 mRNA downstream 377626 23350909 ~ 23361150 (-) True AMCG00011413
AMCG00011422 mRNA upstream 1285 23743078 ~ 23749052 (-) True AMCG00011422
AMCG00011428 mRNA upstream 72720 23814513 ~ 23815783 (-) False AMCG00011428
AMCG00011427 mRNA upstream 87504 23829297 ~ 23835074 (-) False AMCG00011427
AMCG00011431 mRNA upstream 224326 23966119 ~ 23979763 (-) True AMCG00011431
AMCG00011432 mRNA upstream 252345 23994138 ~ 24000458 (-) True AMCG00011432
TU133362 other downstream 677810 23053316 ~ 23060966 (-) True AMCG00011409
TU132729 other downstream 3870874 19865614 ~ 19867902 (-) True AMCG00011356
TU132572 other downstream 4325761 19410368 ~ 19413015 (-) False G105970
TU132457 other downstream 4633507 19102293 ~ 19105269 (-) True G105890
TU132383 other downstream 5547581 18184484 ~ 18191195 (-) False AMCG00011316
TU133710 other upstream 1270412 25012205 ~ 25018332 (-) True AMCG00011445
TU134083 other upstream 2765150 26506943 ~ 26516507 (-) True AMCG00011485
TU134703 other upstream 5883291 29625084 ~ 29625387 (-) True G107713

Expression Profile