RNA id: AMCG00011426


Basic Information

Item Value
RNA id AMCG00011426
length 2841
RNA type mRNA
GC content 0.44
exon number 17
gene id AMCG00011426
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 23786963 ~ 23813716 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCTGTTTACATCGGGCTGGAAATTCCCATGTTGCAACACGGAACACTCGCACTTCCGCGATCATTTTCACAACTGCGTTAGGACGGTAGACTGCTTTGAACGTTTGCCCTCTCAGCAGGACAGTGTAAGACCCTGCAGCAGTATGTTTTGTAAGTAAAGTGCTACCAATGGAGGGGAAAGGGCCCTATCGAATTTATGACCCGGGTGGGAGTGAGCAGAAGGAAGAAGCAAGCAGTTTGGCCTACAAACAACTACTGGAAGAGAACTGCATTCTGAGGGAGCGGATGAAGGGTCTCAAGAGCTTAGGGGACCTGCTAGAAGAATCCCAGACGGAGGCATCAAAATTACGTCAACGAGTGGAAGAGCTAGTGAGAGACAACGAGGTCCTGAGATCCTCATCCAGCTTTAATTCAAGTCTGGGCATTGGCATTCCAAAACAAACCCAAGGCCAAAATAAGAGTCATGAAAACTCCAATCCAGAACTGAAGGAAACTCAAGAATGCAAACTTAGAACTGACCTGAGACCGGTCTCTAGTGAAGGCTCCTCAGAGTTTGAAGTTGTGAATCTTGTGGAAAGACAAGGGTCTAATGAAGAAACCAAATCTGGGGCAGAGTTTCTCCTGCCACAGGAGAATGCTGACCTGGCCAGCCAGCTACAGAGGATGGAGAGTTCACTGAGTGTGTTTGCTGAGGAGTACAGTAAGAACCAGCTTCTTACCCATCTGGGACGCATGGCCTTGGACTTCAACCGGCTCTCTTGTAAAGTGCAGAAGAACGAGCAGAAAACAACTGTTCtgcagACTCTTTGTGAACAGCTCAGACAGGAGAATACTGATCTCCGAAATAAGATGGAAGAGGATCTCCAGTACAGGAACCAAGATCTAGACCAGCTGAGGCAGGAAAACTCAAAACTGAAGAAACTGGTCACTGGCTCAGGGGGACAGAAGGCAGGACCACAGCATGGATCTAAGCAAAACGTGATGAAGCAGGAGCTTGTAGGTGTCAAGATGGACGTGGCTGTAGTGCAGCAGACTGGCAAAGCAGTGGAGAAAACCCAGATGAAGACCTGGGACCCAGAAGCATATGAGAAGAAGATAAAGTTATTGGAAAAGCAGAGGGAAGATGTACTGGAGGTGAATAAGCAATGGGATGTACAGTTTAATTCCATGAAGCAACAGTCAGAACAGAagATCACGGACCTGAGACAGAGACTAGCGGATTCCCAGAAGGCCGTGGCTGAGCTGGAGGTGGAGCGGGAGCAGAAACAGCGGGATTATGACAAGAAGCTTTTATTGGCCAAGTCCAAGATAGAGAGTGTGCAGGCAGAGAAAGAACGGCTAATGGCAGATGCAGAACACAAGCTGAAGTACATGCAGGACCAGCTCTTGCCACTGTCCAAGCAGAGGGAATACCAAGATAAGGAGATCCAGCGCTTGAATAGGGCCCTGGAGGAAGCGCTGACCCTACAGTCCACCGCAGCTCCGCAGACACCCGTGTTTGGTAACCATGGTGACGCAGCGATGAACCTCAGGCGACAAGAGCTCCTTACCCAGATTGCAGTTCTTAAAGAGCAGGTGAAGATCTTTGAGGAGGACTTTCAGAAAGAGCGACGTGACCGAGAACGtatgaatgaagaaaaggaggaGTTGAGGCAACAGGTTGAAAGACTGCAGGCTCAGGTGACAACATTGAATAATCAGGGCCAGCATGAAAGACGCACTTCAGACCCCACCTCTGGGTCCGTGAACCCTCCTGCCAGCCCGCCGTTCTTCATGCAGGGTATGCAGGGTGGTCACCAGGGTTTCGACGGCTGGCCCATCCACTATCCCCCCAGGGTAGCACCCACAGACCCTGGAAGAGACTACCTGCCATTCCAGCCAGGGGGTTTTCCTTGGGCAGCTCCATTCCCTCCGCCCCGCAGTCCTAGAGCTCCAGGAGAGACCGCACGACCCCCCCCAGAGAACACAGACCCTTCACCTGGATTTGGGAAGAGTGAGCGACAGAATATTGACCCTGGAAAGCACTAATGTCTCCGCATTGCCTGGAAAAAAGCAATTGTGACTGCAAAAAGGAATTGTACCTTTGGAATAACTGTtggttaaaatgaaagaaaatatagcCAATTTATTAATGTTACTGTATTTAGATAAACTTGGTCTTTTGCTTATGTTTTGTTGACTGCTATTTtactctttaaatatatatatatatatatatatatataagtatgtatAGAAATATCTCTACTATTGTAtgttttactgttgttattattattattgttattattattattattattgtgattattttcaCTGCTTGATTTAATGGGATGTGAAAAGAAAAGTCTGAAATTGAAAGTACTTTTCAGTTACTCTTACAATTCCTAGTTGTCATTTCCTTGCTTAAATGTGAATACTTAAAATATGATTAAGAtcaaaattatttgaattgatttgaaaatataaatcctTGTAGCATCCATAAgatccccccccctccccaaggCCCTGTCATCTTATAAATTAAATccgtaataaaaaaaaatatatgggaaaataataaaaatgcatagatTTATGGGTtgtaaaaagcattttttttttcctaattgtattttgtttgtaaatgtttataacAACATTGTGGAATTTATGTTGCTTTAACCATGTCCTGTTATCTGTGCTATTGTCAAAGAGAGACCAAGTTTTGAAGAAATTATACCtctttataaatgaataaatacataaatgaataaatacatattttcttttaatacattaGGGCTTTATATTTGCAGTTGAACTATAAATCTGCGTTTTCAGAGCAGGTCATTTAATC

Function

GO: NA

KEGG:

id description
K23829 TNIP1, ABIN1; TNFAIP3-interacting protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133407 lncRNA upstream 246235 23539365 ~ 23540728 (+) True G106640
TU133398 lncRNA upstream 265032 23382282 ~ 23521931 (+) True G106631
TU133385 lncRNA upstream 425949 23356734 ~ 23361014 (+) True G106619
TU133373 lncRNA upstream 431320 23353628 ~ 23355643 (+) True G106609
TU133371 lncRNA upstream 579486 23207246 ~ 23207477 (+) True G106607
TU133503 lncRNA downstream 15573 23829289 ~ 23833300 (+) True G106718
TU133524 lncRNA downstream 28216 23841932 ~ 23844911 (+) False AMCG00011430
TU133535 lncRNA downstream 127296 23941012 ~ 23971183 (+) True G106742
TU133666 lncRNA downstream 1106135 24919851 ~ 24943678 (+) True G106863
TU133676 lncRNA downstream 1125306 24939022 ~ 24940823 (+) True G106871
AMCG00011425 mRNA upstream 11455 23760289 ~ 23775508 (+) True AMCG00011425
AMCG00011420 mRNA upstream 109687 23663024 ~ 23677276 (+) True AMCG00011420
AMCG00011418 mRNA upstream 129521 23656670 ~ 23657442 (+) True AMCG00011418
AMCG00011419 mRNA upstream 163663 23622780 ~ 23623300 (+) True AMCG00011419
AMCG00011416 mRNA upstream 187751 23592543 ~ 23599212 (+) True AMCG00011416
AMCG00011430 mRNA downstream 22103 23835819 ~ 23844867 (+) True AMCG00011430
AMCG00011429 mRNA downstream 95984 23909700 ~ 23938038 (+) True AMCG00011429
AMCG00011434 mRNA downstream 335241 24148957 ~ 24174504 (+) True AMCG00011434
AMCG00011435 mRNA downstream 396274 24209990 ~ 24242241 (+) True AMCG00011435
AMCG00011437 mRNA downstream 979656 24793372 ~ 24808824 (+) True AMCG00011437
TU133489 other upstream 33961 23748674 ~ 23753002 (+) True G106711
TU133383 other upstream 430404 23356062 ~ 23356559 (+) True G106618
TU133378 other upstream 445198 23341308 ~ 23341765 (+) True G106613
TU132939 other upstream 3419740 20361208 ~ 20367223 (+) True G106242
TU132823 other upstream 3447876 20296011 ~ 20339087 (+) False AMCG00011365
TU133992 other downstream 2542451 26356167 ~ 26360775 (+) True AMCG00011476
TU134100 other downstream 2956722 26770438 ~ 26771214 (+) True G107202
TU134126 other downstream 3004336 26818052 ~ 26830055 (+) False AMCG00011488
TU134311 other downstream 3898490 27712206 ~ 27727867 (+) True G107394
TU134734 other downstream 5883885 29697601 ~ 29699419 (+) True G107741

Expression Profile