RNA id: TCONS_00009278


Basic Information

Item Value
RNA id TCONS_00009278
length 684
lncRNA type retained_intron
GC content 0.40
exon number 3
gene id XLOC_004684
representative True

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 20618336 ~ 20625630 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cttttTTAATATCAGACACACAACCTGAGCATATTTATGAAAACACAGTGGAGGAGATTTGTTTGGGAGAACTGAGTGTTTCATCCAGGACAGAAGAGGCATCAGAGGAAATTGCTCAGACTGTCCCGGTCATCATTAAGAAAATCGATCTAGAGATCAGCCCGAAGCACAGCACTACAAGCACTTTAGACACAGACGGCCAGGcagatgaaaagaaaacaaagaagAAGGGTGTGAAAAAGGGACAAACTAAACTACTTGAACCAAAAGCTGCACTGGAGGTGgaggaaaatgaaaagaaagagaAGAAATCTGTGAAGAAGAAGGAAAAGACAAATGGAACTAAAGGGAGAGCAAAGACAGGGGAACAGTCCTCAGTTCAGACTGATTCAGTTGTGGATTTCTCCATTAATGAAGAGAAAAAACCTGAATCAGAGAGTGAAGATGAAGGAAAAGACTGGTCAAAGAGCCCTGTTCCTCCTACaccaaagaaaaaacaaatgaagCCAAGTAAAcgaaaaaaaagtaactttttgTTAACGATAGTGGCCTGATTGGTAAAATGCTATTTCTGTCATTGCAGTGAGATGTCATCTCAGTGACAGTGAAGAAGAAAACGATGAGAAAGAGGAGAAGGACAAGAAGAAGGAAgctaaaaaaacaccaaaaaagtctaaaaaaaac

Function

GO:

id name namespace
GO:0061512 protein localization to cilium biological_process
GO:0005929 cilium cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-9651 Predicted to be involved in protein localization to cilium. Predicted to be active in cilium. Is expressed in epiphysis; retina; and retinal photoreceptor layer. Orthologous to human TULP2 (TUB like protein 2).

Ensembl:

ensembl_id ENSDART00000142996

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00010920 lncRNA upstream 115398 20491619 ~ 20504801 (+) False XLOC_004679
TCONS_00010919 lncRNA upstream 119635 20491619 ~ 20500564 (+) False XLOC_004679
TCONS_00010918 lncRNA upstream 119635 20491619 ~ 20500564 (+) False XLOC_004679
TCONS_00009269 lncRNA upstream 119870 20492884 ~ 20500329 (+) False XLOC_004679
TCONS_00009268 lncRNA upstream 124329 20492884 ~ 20495870 (+) False XLOC_004679
TCONS_00010921 lncRNA downstream 99997 20721097 ~ 20764173 (+) True XLOC_004688
TCONS_00009291 lncRNA downstream 185797 20806897 ~ 20886482 (+) False XLOC_004689
TCONS_00010922 lncRNA downstream 185815 20806915 ~ 21106987 (+) False XLOC_004689
TCONS_00010923 lncRNA downstream 185909 20807009 ~ 20886482 (+) True XLOC_004689
TCONS_00010924 lncRNA downstream 1136717 21757817 ~ 21799396 (+) False XLOC_004694
TCONS_00009274 mRNA upstream 19821 20583552 ~ 20600378 (+) False XLOC_004683
TCONS_00009275 mRNA upstream 23441 20587179 ~ 20596758 (+) True XLOC_004683
TCONS_00009273 mRNA upstream 44818 20567382 ~ 20575381 (+) True XLOC_004682
TCONS_00009272 mRNA upstream 55521 20552190 ~ 20564678 (+) True XLOC_004681
TCONS_00009271 mRNA upstream 111840 20506197 ~ 20508359 (+) True XLOC_004680
TCONS_00009279 mRNA downstream 6064 20627164 ~ 20642019 (+) False XLOC_004685
TCONS_00009280 mRNA downstream 6405 20627505 ~ 20640168 (+) False XLOC_004685
TCONS_00009281 mRNA downstream 20002 20641102 ~ 20652923 (+) False XLOC_004685
TCONS_00009282 mRNA downstream 20371 20641471 ~ 20645949 (+) True XLOC_004685
TCONS_00009283 mRNA downstream 46201 20667301 ~ 20677982 (+) True XLOC_004686
TCONS_00009270 other upstream 121119 20498983 ~ 20499080 (+) True XLOC_004679
TCONS_00009249 other upstream 715784 19866998 ~ 19904415 (+) False XLOC_004671
TCONS_00009250 other upstream 723272 19877842 ~ 19896927 (+) True XLOC_004671
TCONS_00009245 other upstream 1231926 19388143 ~ 19388273 (+) True XLOC_004667
TCONS_00009243 other upstream 1234644 19385426 ~ 19385555 (+) False XLOC_004666
TCONS_00009286 other downstream 70258 20691358 ~ 20692013 (+) False XLOC_004688
TCONS_00009295 other downstream 816246 21437346 ~ 21437458 (+) True XLOC_004691
TCONS_00009299 other downstream 1172902 21794002 ~ 21794116 (+) True XLOC_004694
TCONS_00009304 other downstream 1822529 22443629 ~ 22444772 (+) True XLOC_004697
TCONS_00009307 other downstream 1957304 22578404 ~ 22578530 (+) True XLOC_004700

Expression Profile

//