RNA id: TU133519


Basic Information

Item Value
RNA id TU133519
length 1447
lncRNA type sense_over
GC content 0.44
exon number 5
gene id AMCG00011428
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 23813857 ~ 23817543 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gacagatAGCAATAAAGACCCTGAAATCCCTGACAAGCCTCAGATTCCTCCTGTGCTGGGCTAGAGAGAGGACAGAAAGCAGCCCCACTGCAACGATGGGGCAGGAGAGCAGCTGGATTTTATCCCTGCTTCTAGTGGGCTTTCTTCAGCCATGTCTGTTAGCAGAAAACCTGCAGGTTTCCTGTGACATGACTGAAGGCAATATCTTTGATTATGGCGCCGTGACATTAAATGGGAGTCGATACGTCCCGTTCAGCGAGTACCAGGGGAAAACAGTCCTGTTTGTCAATGTTGCGACATACTGAGGACTGACCTTCCAGTACTTAgAATTGAATGCACTGCATGAAGAATTGAAGGGCTATGGCTTTACCATCCTGGGCTTCCCAAGTAATCAATTTGGGTTGCAAGAGCCTGGTAGCAACAAAGAAATCTTGTCAACACTGAAGTATGTCCGGCCAGGAAATGGATTTGTTCCAAATTTCCAGCTTTTTCAAAAGGGAGATGTGAATGGAGAGAAAGAACAACAAGTCTACACTTTCTTAAAGAACGCCTGCCCGCCAGTGGGGGACAGTTTTGGGAATCCAACCAACAGACTGTTTTGGCAGCCACTGAAGATGAATGACATCAAGTGGAATTTCGAGAAGTTTCTGATTGGGCCCGATGGCAAACCAGTAAAGCGCTGGTACCCCAGGGTGAACGTCTCTGCGGTCAGAAAGGACATCATTGAGTACCTAACAGTCCAACAgatgacacagagacacacaagaTGGCAAGAGTATTTGGGATACTAAATTTGCTTCATAACAATGATCGAACAAACCAGAAAAATCTGGTTGGTGTTTTTCTCTATGCACCGGTCATTGTGTTGCTATTTCTTAAAGCGCTGCCTTTGCTTCTATGATTTAATAGTGTCGACCTTTTCAAATCTGTTTTGCCCTCAGAAGAATACAGAAACCACACCCTTTTCAAGTTAATACACAATATCAGTTTGCCCCATGACCACACACAGGATAGCACAGGATAACTGAAATTGTACGTGTTCTTAATCCTGACATAGATGcccaatatattaattttgcctcttttatttatttccttatttaaaacGGGTTGACAATGAAATATAGCAGACTTAAACCTAAATTGAATCCCACGGATGTGAAAATGATCTGCTTGAATTTGCTTGTTGCTTCCGGCTTTCTGTGACAATGGGGGCTACAGTCGGTGGGTATTGGTTTGAGGAGGCGCATGCGAGTGAAGGTGAGGCCTTAAAGCAGTTTACTGTGGGGTCTGGCCTGAAACTCGGGATCTGAGGGGCTCTTCAGTGCATTCAAGCTGCCCCAGTGTTCCCAGAGTAATGCCACCTTGTCAAACCTATACTCAAGTCTCTGTAGTACTTCAGATTTGACTACTTCATTCTAATAAAGCATTAAACCTGAAccatttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133511 lncRNA downstream 16638 23795680 ~ 23797219 (-) True G106723
TU133456 lncRNA downstream 222548 23591101 ~ 23591309 (-) True G106682
TU133432 lncRNA downstream 296054 23517378 ~ 23517803 (-) True G106665
TU133416 lncRNA downstream 414765 23396513 ~ 23399092 (-) False AMCG00011414
TU133370 lncRNA downstream 636278 23177228 ~ 23177579 (-) True G106606
TU133521 lncRNA upstream 11755 23829298 ~ 23834974 (-) True AMCG00011427
TU133612 lncRNA upstream 764413 24581956 ~ 24582174 (-) True G106817
TU133665 lncRNA upstream 1098621 24916164 ~ 24919197 (-) True G106862
TU133694 lncRNA upstream 1169262 24986805 ~ 24991176 (-) True G106885
TU133876 lncRNA upstream 2188436 26005979 ~ 26006456 (-) True G107035
AMCG00011422 mRNA downstream 64805 23743078 ~ 23749052 (-) True AMCG00011422
AMCG00011423 mRNA downstream 72064 23738776 ~ 23741793 (-) True AMCG00011423
AMCG00011424 mRNA downstream 202346 23610729 ~ 23611511 (-) True AMCG00011424
AMCG00011421 mRNA downstream 251928 23518801 ~ 23561929 (-) True AMCG00011421
AMCG00011415 mRNA downstream 305493 23498826 ~ 23508364 (-) True AMCG00011415
AMCG00011427 mRNA upstream 11754 23829297 ~ 23835074 (-) False AMCG00011427
AMCG00011431 mRNA upstream 148576 23966119 ~ 23979763 (-) True AMCG00011431
AMCG00011432 mRNA upstream 176595 23994138 ~ 24000458 (-) True AMCG00011432
AMCG00011433 mRNA upstream 271729 24089272 ~ 24102925 (-) True AMCG00011433
AMCG00011436 mRNA upstream 385212 24202755 ~ 24204323 (-) True AMCG00011436
TU133362 other downstream 752891 23053316 ~ 23060966 (-) True AMCG00011409
TU132729 other downstream 3945955 19865614 ~ 19867902 (-) True AMCG00011356
TU132572 other downstream 4400842 19410368 ~ 19413015 (-) False G105970
TU132457 other downstream 4708588 19102293 ~ 19105269 (-) True G105890
TU132383 other downstream 5622662 18184484 ~ 18191195 (-) False AMCG00011316
TU133710 other upstream 1194662 25012205 ~ 25018332 (-) True AMCG00011445
TU134083 other upstream 2689400 26506943 ~ 26516507 (-) True AMCG00011485
TU134703 other upstream 5807541 29625084 ~ 29625387 (-) True G107713

Expression Profile