RNA id: AMCG00011430


Basic Information

Item Value
RNA id AMCG00011430
length 3281
RNA type mRNA
GC content 0.45
exon number 13
gene id AMCG00011430
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 23835819 ~ 23844911 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCGGGTGGAGGAGTCTAGAGATGGCGTCCTTGCTGCAGCCCGAGCGAGTGCTCTACCTCGTCAACGGAGAGAAGAAGATTCGCTCCCCGCTGTCGCACCTGTATTTCTGCCGCTACTGCAGTGAGCTCCGGTCTCTGGAGTGCGTCTCCCATGagGTGGATTCTCATTACTGTCCCAGCTGCCTGGAGAACATGCCGTCAGCTGAAGCCAAGCTGAAAAAGAACAGGTGTGCCAACTGTTTTGACTGCCCGTGCTGCATGCACACTCTATCCACAAGAGCCACCAACATCCCTGCCCCCCTCCCAGATGACCCTGCCAAGACTGCTATGAAGAAAGCCTACTATCTGGCCTGTGGCTTCTGCCGCTGGACCTCGCGCGATGTGGGCATGGCCGACAAGTCTGTAGCCAGTGGAGGCTGGCAGGAACCCGAGAACCCACACACCCAGAGGATTAACAAGCTGATAGAGTATTACCAGCAGCTGGCCCAGCGAGAGAAGGTGGACCGAGACAGGAAGAAACTGGCGAGACGTCGTCCTTACATGCCTCTGGCCTTTTCGCAACACACTATTCACGTGGTGaaaaataacttgtataaaAGGGGAGTTACAAGATATGAGAGACCACAAGCATCAGCagaatatattcatattgttttaattgccaTTAGACTGAAAGAAGGTGAGGACCAGAAGGAGATAAAGATTGAACCTGCCCAGGCTCTGGATGAGGTGGAACCACTTCCTGAAGACTGCTACACACGTCCCATTAACCTGCCGGAAGTGACTACACTGCGCCAGCGTCTCCTGCAGCCTGATTTCCAGCCGGCCGGGGCCTCTCAGCTGTACCCCAGACACAAGCACCTCCTGATCAAGCGCTCCCTCCGCTGCCGGAAATGTGAGCACAACTTGAGCAAACCAGAATTCAATCCGACTTCGATTAAGTTTAAAATTCAGCTGGTGGCAGTGAATTACATCCCCGAGGTGCGAATCATGTCTATTCCAAACCTGCGATATATGAAGGCAAGTGTGACCTCCTTAGAAAGCCAGGTCCTTCTGACCTTGACAAACCCAGTAGAGAACGTCACGCATGTCACCCTGTTGCCATGTGAGGAGGGAGACCAGGACGACTTAAACAGCACAGCGAAGGTTGTGGTGCCTCCTAAGGAGCTGGTCTTGGCTGGGAAGGATGCTGCAGCAGATGTGGTGGCCTTCAGGAAGTCGAACAAGATTGGCTTCTTCATCAAGGTGATTCCACAAGGTGAGGAAGGGGAGGTGGTGGTGTCGTTCAAAATCCGCCACGATTTCCGCAACCTGGCCGCCCCCATCCGCCCCACTGACGACGGGGAGCCGGGGAGCGAGCCCATCTGGCTCACCCACCATGTGGAGCTGAGCCTGGGACCCCTGGCACCACCCACACAGTGAGCCCCCCGGCACAGTGCTGATCTGAGCTCGAGCCGCCAGAGCACCCTTGTAGTCCTTCATAGCACCAGGAGAGGGCACTGTGGCACAATTGCTCTCCTGTAAACAACTGATACCCACTAAAGAACAAAAGATCTCGACATCCTGTTAGAAGGAGCTGCTAACCATTGATTATTCGCAATTTCCACAGGCCTTTTTATTTATAACCTGTTGAACTAAGGCATTAGTTCAGATGACCGCATAGCTTCGGTGGATGAGGTTTTCAGTTTCGAGGTATTTatcaatgcctttttttttttaattgcaatgtaATTTGATGTAGGTTTCTGGAGGATATTTTTACTTGGTATGGCATACTTTGTGGAATTTATTGCAGTACAGTTATGAATTTATCTGGTTTCTTCTTGAGTCAGAAATACAACGATGACGTTTATTTGCCATTGACAAGAATTGGAATTTGTTAACCTGTATGTATGAATGCTTAAGTTAAGGCCTAAGACATttataaaaagacattttacccatataacaatgtatttatcaaCTGAGTCATTTAATGTttccagattaaaaataaataaatacaaacttcCAAATATAGTTGTTATAAACTTTAGTGTGCCGACATATCTGGAGAaccttgttttttaaacaaacacttttgtGGTTTCTGGCATTCCAACAGTTAAGTgcttttttattccattttgcTGATACAGAATTGTAGCTACTGAGTTGTCTTGTTTACAAACCTCTTGGCTTCTAGAAATCAGATTGAATGCAGCGTGGTAAAATCTGTCCAGCACTTAACACACTTCCCCAGGTAGTCaagttgtatattttgtaagctGTGCTCATTGTTACAACTTTCTCATGGGTGGAAAGAGTTAaaacgttttctttttttaagcaacAATTCCTCTAAAAAGCTACATggaatgtatacattataaaaatatgaaatgtccCTCCAACAACTCTTAAAACTGTACAGCAGTTTATTCACAGATTCGGTGGAGCTCCGATATTCGCATTTCATTAATTCTGATTAAAGCCCTTCTGATAACAGACAGTTGTGATATCCAACATGCCCCAGAAGGTGTGGTCAGGTGTGGTCAGTCTACCAATCTGAAGTTCATATTAAAGCAGAGTCCTCCATTTTGGCTCCGTTACTTGACACATTTTATGGGTGACCAAAAACATGATTGTTTACAGCTTGTGATACACATTACACTGATCGAGCATGAGAAGCTAcaagtatttattcaatgtaGTGTTGAAGAAGCTGTCTGCATGTGCTtgaatctttcttttttctgttttaacatCTTTTATAATGGTTTcctgtatttattatgaaagCTGGATACAGTATGGTTGTTTTGGGCATCGTGAGGGGACAAGAAGCACTGAAATATCTTCAGAAAGGTTAACTGTTCACACGCAGTCTGATGTCTTGTTGTTCATGAAGATTAATGGCCCCATTTGACATGGATGAAAGCTTTCCTCTTACCCGACTTCATCAGTGCTGTGGGTCAGGGAATATGTGATTATTACGGCCGTATGACAAATTGGATGGAAACCGTTTCCATTCACTGCTGTGAAAGTGAAGGCTGTGTATCTTTTGAACACTAATTTCTTTTTTCTACAAAGTGCATCTCGTTTGAGAAAGTAACTCTCATAATCTGTAGGTTTAAACATGACACAATATCTGCTTCATGTTAAAAGGTCTCTGTGTGCTTAATGTTCAAAGTAATATTCTTCCTGCTTAATTGATGAAATAAGTGTTATTCTTTAAGCCAGTGCTACTTCAACAGTTGATTTAAGACTGAACACCAATAAAGCTGACTGATTACAGATGTA

Function

GO:

id name namespace
GO:0005869 dynactin complex cellular_component

KEGG:

id description
K10426 DCTN4; dynactin 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133503 lncRNA upstream 2519 23829289 ~ 23833300 (+) True G106718
TU133407 lncRNA upstream 295091 23539365 ~ 23540728 (+) True G106640
TU133398 lncRNA upstream 313888 23382282 ~ 23521931 (+) True G106631
TU133385 lncRNA upstream 474805 23356734 ~ 23361014 (+) True G106619
TU133373 lncRNA upstream 480176 23353628 ~ 23355643 (+) True G106609
TU133535 lncRNA downstream 96145 23941012 ~ 23971183 (+) True G106742
TU133666 lncRNA downstream 1074984 24919851 ~ 24943678 (+) True G106863
TU133676 lncRNA downstream 1094155 24939022 ~ 24940823 (+) True G106871
TU133680 lncRNA downstream 1141971 24986838 ~ 24991237 (+) True G106874
TU133681 lncRNA downstream 1141971 24986838 ~ 24991174 (+) False G106874
AMCG00011426 mRNA upstream 22103 23786963 ~ 23813716 (+) True AMCG00011426
AMCG00011425 mRNA upstream 60311 23760289 ~ 23775508 (+) True AMCG00011425
AMCG00011420 mRNA upstream 158543 23663024 ~ 23677276 (+) True AMCG00011420
AMCG00011418 mRNA upstream 178377 23656670 ~ 23657442 (+) True AMCG00011418
AMCG00011419 mRNA upstream 212519 23622780 ~ 23623300 (+) True AMCG00011419
AMCG00011429 mRNA downstream 64833 23909700 ~ 23938038 (+) True AMCG00011429
AMCG00011434 mRNA downstream 304090 24148957 ~ 24174504 (+) True AMCG00011434
AMCG00011435 mRNA downstream 365123 24209990 ~ 24242241 (+) True AMCG00011435
AMCG00011437 mRNA downstream 948505 24793372 ~ 24808824 (+) True AMCG00011437
AMCG00011439 mRNA downstream 972712 24817579 ~ 24824029 (+) True AMCG00011439
TU133489 other upstream 82817 23748674 ~ 23753002 (+) True G106711
TU133383 other upstream 479260 23356062 ~ 23356559 (+) True G106618
TU133378 other upstream 494054 23341308 ~ 23341765 (+) True G106613
TU132939 other upstream 3468596 20361208 ~ 20367223 (+) True G106242
TU132823 other upstream 3496732 20296011 ~ 20339087 (+) False AMCG00011365
TU133992 other downstream 2511300 26356167 ~ 26360775 (+) True AMCG00011476
TU134100 other downstream 2925571 26770438 ~ 26771214 (+) True G107202
TU134126 other downstream 2973185 26818052 ~ 26830055 (+) False AMCG00011488
TU134311 other downstream 3867339 27712206 ~ 27727867 (+) True G107394
TU134734 other downstream 5852734 29697601 ~ 29699419 (+) True G107741

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00014850 False 3200 mRNA 0.48 14 NC_007125.7 49462855 ~ 49490735 (+)