RNA id: AMCG00011431


Basic Information

Item Value
RNA id AMCG00011431
length 5665
RNA type mRNA
GC content 0.39
exon number 7
gene id AMCG00011431
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 23966119 ~ 23979763 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTACTTTGCTTTTACACTCCCTGCCTTGTAAGTTGGTAAAGCGTGATAACTTGTCCTCCAGCgctttaatacatttatgagTGGCCTGTTTGGTTGAGttcttctgtctttttctcCTGCAGTTGCTGGGAGCTGCGTTCCTGGGCATTGGACTGTGGGCATGGGCAGAAAAGGGAGTGTTGTCAAATATCTCTTCAATTACAGACCTGGGAGGATTTGACCCAGTGTGGCTATTTATAGTGGTTGGAGGGGTGATGTTCATTCTAGGATTTGCTGGCTGTATCGGCGCTCTTAGAGAAAACACATTCCTCCTCAAATTTtTCTCTGTATTTTTAGGTCTTATTTTCTTCCTGGAGTTAACAGCTGGGATCCTAGCTTTCGTGTTCAAGGACTGGATCAAGGACCAGCTGAACTTCTTCATTAATAACAATGTCAAGGCTTATCGCGATGACATTGACCTTCAAAACCTCATAGATTTTGCCCAAGAATATTGGTCTTGCTGTGGTGCACATGGTCCAAACGACTGGAACCTGAATATTTACTTCAACTGCACTGAGCTGAACCCGAGCCGAGAGCGCTGTGGGGTCCCCTTCTCCTGCTGCCTCAAAGACCCAGCGGAGGATGTACTTAACACACAGTGTGGCTACGATGTGCGGCTTCAAGGAgaTATGGAAcagcagaaatacatttataccaAGGGCTGTGTGGGACAATTTGAAAAGTGGCTCCAAGACAATTTAATAGTTGTAGCTGGCATCTTTGTTGGAATTGCACTACTACAGATCTTCGGAATCTGCCTGGCACAAAACCTGGTGAGCGACATTAAAGCAGTAAAGGCAAACTGGTGACGCCAGGCCCTGAAGACATGACAGTGGCAAGAAACAGTCCAACTCCCGGCCTCCCCTGCCAAGCAGCTGTAAACTGGACTAATGCATGGAGCAGTGTTTGCAGCAGCGTGGGGGGGTTAGGGGTCTTGAAACGTGGATTCCTGTGgattgatctgtttttttttttccccttttgagTGATTTTGCAGAAGATCATAAGTGAGCGATCACAGAGCACACACTCCTGAGAGAAGGTTAAAATATTTACCCTAGAGCACAGGGAGAAAAAATACCAGTTTGGAGACTGccattctttattattattgttataataatgataatgataaaaaaataaaataataagagtaACGACAACAGCGGATCAGATTAATAGTGTCTGCCATTCCAAGCAGAACCTTTTGTTCAGTTTTGAGTTTGCGTTGCTCGCCTCCCCCTCTTTAATTTTTTGGTCTTCACCACTCAAGCCCTTCCATCCTGAATTGATAGGCTGACAGAAATCAGTTAGCTCGGATTTCAGTTTTGATTCTGGCTGCGGGTCCCTATTGAGTTCAATATCCATCGTTTGGTGGACGTAACGTCGGAGGAGTGAGAACGACGGAGGATGCGATCTGTCAACAAACTCTCTGGGGATCTTAGATTCAAACTGACCAGCTGATGGGTTGAAACCTTGTGCGTCGTAAGAGTGGCCGAGTAAATATAAAACCAGTGTTCAGAATCCTATTAACCATTTTAAACCTGGAACCATCTGTTTCTCTTTTATCCTTTTATTATGATAATCTAGTTGTTTTCAAtgctgtctgtttatttttgtatgtttttttaagccaCTAAAAGGAAGGCGTTTATCTGTGTAATACTTAGTACTTCTGGCCTTATAGGCAGGACGTTTAAGTTCATTATTACTAGGCATTAGttagcattattttattttggggaaaTTTCAGAAGCCAACATTTATGTTCTCAACAATATGTATGTTCTATTAACCTTGTCTTAACTTTTTTCCTCACTTTCCTTTTGCTGTTTCTCTAAAATCTGGTAGAAAGACAGAGGAGTAGATTGTGGTGATTGTAATCACTCAACCATGAGTGCGTTGCGGGTATAGTCAATATAATGCACCTTTGGGATGATCACTGCATTCTACTATTACACGGTAGATCTGTTGCTTCACACTTGTCTGTAAAAACAGTTGTGACCAATACTgagatatatttgtaatttgtagaCGAGAGACTTTCTCTCACAGTGTTGAAGCTGTGCCAGTGCCTCCCATTACCTGGAAATGTCAAGGGCTGCAGTTTCCTCGACAGGGACTAAACACCCTGGTGAAACAAGCCAACCCTTTATAGTAATGTTAAGCCCTAGGAAAAGAAAAACGAACATGCTCGAAATTGCTCAGCCATTCTAACTCCAAAAGACAGGGTTGATTGTATTTTGGCAATGGCCActccatctttttcttttcttttttagtacATTCTGCTTGAAAAGAACACTGCTATCCTTTGTTTGTAATGTGTTGAATTGGgcaatgatgttttttttttatttacacgCAAGTACATTCCTGTCAGAAATGACAGTAAAAAGCTTCTATGTACCTGCAGTCTAACATGCTATTTTCTCCTTGTTCTGTTCTTCACCTTCAGCTTACGTGTCTTACTAAGGCATTATATATAATCTAAGTTCAATATCTCAGAAATGAGGTCAGTGGTTCTTTGCCACTGATATGCGAGTGCCAACACTTTGCCTCCTGTAGTGCCAACAAACTGTCTTAAATCACAAGTGGCATCATAACACAGGAAACTAtatagacatttttatttaaagataaatatattgtgGCTTCCAGTGgaagatattatttttttcaaatgccgTCTCTTTAAGATCATTTTCTAAGCCTTTGCATTCCATCCTTTCTGACAGAAGTCACTAACTGCTCCTTCAGTGGTGATATATATTTTGGGGGAAATGGAGAAGACTACATGTTGGCATGTTAATGAGTGCTTGCAATAGTCTGGAGAAATATCATGCATGTTAGAGTCTTAAGTGTAGGGTCTGATGAAAACTCAGCTCAACTGCCTCTCACAGACATGTATGTAGATGTCTGTGTGCAAAATAGTCTACATTCGGTGAATTTCAACACAAAAGCTACAGCACTTCTACCTGTGTGCGAACTGCCTAACGTTCTTTAgtcacatattattattattatatttatcaaactTCCAGACTGTTTAATTTCTACCCATTTTTGCTGACACAGTTGAAACAAGTGCTGGATAGAAATATAGTGCGGCCCAGAATTTAAATgaatagcatttttttaaatatgcaattgtCATGCGTCTTCCCATTCAGACCCATGACATCCTGTCCTTGCATTTCTCTACGACTGAGGAGCTTCCCTGGCAGTTTCTCTGCATCTCCATGTTGAACTTGTACCATTCTTGGTACAGAAATACTGGCCATAATCTGTTTTTctcatagtgtgtgtgtgtgcgatttAGTACAATCTCGCTTTCCTTACATTGTACTCCATTCCTGTCGAATTGTCTCGCACATACAGGTCAGCACCTTGATTATATAAAAGTACCTTAATGCCCTCCGCatcctttacattttattttatttcaaacaagagctatcttttttaatttagattgtgCTTGTTGTTTAGTTGGACTGCCTGGTAAGTGAATTTCGGCTTGGAACAAACTAATAAAGCCCACTGATGGGCCCGATATCTCAAAATAGATTgccataattaattaaattctctACAGATGTCTTTAAGGTAAAAAGGGAAGGTCTCTGGCTTATTGCGGCTGTCTATGAAGAAGCAATAATTGTAAGCAGATGAGTTGGAGCGATTCCCGTCGTTTGAAACCGTTGTTAAAGCATTGTAAGATATCGGCACTTGTTGTTTTGGTCTTGATTCCGGTGTCTTCAGTGTAGTATCACTGAATAAGACACGTTTTGTCTTTTAGactttttgccatttttatttaacttttttaataaagtttctCACGTTTAATTGTACATTGTCTTATTTTAGTACATGTTGCAGGGAGTACTACATCAATGCAAATGTTGTAATTGTAGGTCAACATGTATATGATTTAGCCTTTTGTTCTCCGTGATACTTAAATCCGCATCTGGCAGTGTGTCTTTGGCGATAAATTGGGACCTATTCTAAACTGAGTAATCACAAACAATAgaccaagaaaataaatcattgtgtTCGCAAGCTGTCAAAATGTCTGCACTTGTATGAACCCGTGACTCTAcctcaagacagaaaacaaagtcttaaaaaaaaaaaaaaaaaaaagacaggattTTTATTACCTCCTGTTTCTTTGTGTACCGCAGAACATCAGACTTAccaatttacatttctgtgctgGGTGATGAAGAGAATCTGTTATGACTGCAGAATCCTGTCAGTCTagtgcatattttattttctccaaataTCTGTTATGTTGCAGTCTCTATTCACTTGACTTTGCGCTCTGATTCAGCACAGCACATGGCAACAGCAGAATTATTCCAGTGACTTACAGCCATTAGGTCATGAAGGGAATTCTGATTGTTCAACCACTTGGAAgatattctttaaatatttatatgccAGAGCAGTTATAAAGAATAGAGATGGACCGAAAATATAGCCATCAATGAAGACATTGTTGGCAGCATCTACCTTCAGAATTCTAATTTAGCATTCTTTTATTCGTTTTGATTGTTTGGATTCCATGTTGATCTGATCGATTTCACGTCCCTTTGTAGATCTGTCCTTCTCTTGTCCAGTAACTTGAAGGGGGAGAGGTGGGATATCTAGCTTTTGCAGTTTCCACAAAAAATCAATCCACAGTGGCGTTCCATTATTTCTAATCGCTATCATGATGCTGGCTGGCATATTCCATGCTCCCCAGATTACAATACTAATATCTGGGTCTTTGTATTTGTGTACCATTCGTGAATCGCAACCAACCACATATTTTAGTACTCCAAAATGTAAgagcatatttatatttttaagtaaaggACAGTACATGTTATTTTCTCATAGtatatattcttttttgtttgtttcgtttttgGTGTCCACCCTGTCATTGTTTGTATGTTAGTGTGCTTTCAACCTCACTGAATAGGATTgaactgtttgttttctgtattttcattttattgttttaacctGACAAACAAAAGCTATTGTCTGTGCACAGGCTCAGTACATGTGAAGCTCAGTTATCATTAGGGTATACACTAGTTACTGTATAAAACCATCCTccctttacttttttaaagggGGCAGGGTTCCTATTTTGTTCAAATCATGAGCTGCATGAGGCCCCAGTGAAATTACCGCAGTTGGGCTCCTATGTTTTGTGATGTAATATTACTAATCCAGtacaattaaacataatacacTGTTACACTTCAGtcttacatttgtgtttttaaacctgGTCTCTTGAGGGTGCTGAGGTTACTGCTCCCCCACTCACTACTTTGAATGATCTGTGATGCAGTATTACAAGGTCCTTATCCATTAGTCATTCAAGGAGAAACGAacgtgaaagaaaaaaaaaaaatcactgtcatttttattttccaagtaGTAAACGTTAACAATGTTGAATTGTTTACAAGTTTGATTCCTAAAACAATTTGTTAGAACTACTAgttttgatgaaaataaataaaaagacattgatTGTTGGACATGGTCTGTTACACTGTATATTGTCTTATAAATATGCTTCTTTTTCATATTGAATAAAATGATTTATGACACA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K17345 TSPAN5; tetraspanin-5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133521 lncRNA downstream 131145 23829298 ~ 23834974 (-) True AMCG00011427
TU133519 lncRNA downstream 148576 23813857 ~ 23817543 (-) True AMCG00011428
TU133511 lncRNA downstream 168900 23795680 ~ 23797219 (-) True G106723
TU133456 lncRNA downstream 374810 23591101 ~ 23591309 (-) True G106682
TU133432 lncRNA downstream 448316 23517378 ~ 23517803 (-) True G106665
TU133612 lncRNA upstream 602193 24581956 ~ 24582174 (-) True G106817
TU133665 lncRNA upstream 936401 24916164 ~ 24919197 (-) True G106862
TU133694 lncRNA upstream 1007042 24986805 ~ 24991176 (-) True G106885
TU133876 lncRNA upstream 2026216 26005979 ~ 26006456 (-) True G107035
TU133878 lncRNA upstream 2029757 26009520 ~ 26012447 (-) True G107037
AMCG00011427 mRNA downstream 131045 23829297 ~ 23835074 (-) False AMCG00011427
AMCG00011428 mRNA downstream 150336 23814513 ~ 23815783 (-) False AMCG00011428
AMCG00011422 mRNA downstream 217067 23743078 ~ 23749052 (-) True AMCG00011422
AMCG00011423 mRNA downstream 224326 23738776 ~ 23741793 (-) True AMCG00011423
AMCG00011424 mRNA downstream 354608 23610729 ~ 23611511 (-) True AMCG00011424
AMCG00011432 mRNA upstream 14375 23994138 ~ 24000458 (-) True AMCG00011432
AMCG00011433 mRNA upstream 109509 24089272 ~ 24102925 (-) True AMCG00011433
AMCG00011436 mRNA upstream 222992 24202755 ~ 24204323 (-) True AMCG00011436
AMCG00011442 mRNA upstream 935453 24915216 ~ 24957646 (-) True AMCG00011442
AMCG00011446 mRNA upstream 1012585 24992348 ~ 25003276 (-) True AMCG00011446
TU133362 other downstream 905153 23053316 ~ 23060966 (-) True AMCG00011409
TU132729 other downstream 4098217 19865614 ~ 19867902 (-) True AMCG00011356
TU132572 other downstream 4553104 19410368 ~ 19413015 (-) False G105970
TU132457 other downstream 4860850 19102293 ~ 19105269 (-) True G105890
TU132383 other downstream 5774924 18184484 ~ 18191195 (-) False AMCG00011316
TU133710 other upstream 1032442 25012205 ~ 25018332 (-) True AMCG00011445
TU134083 other upstream 2527180 26506943 ~ 26516507 (-) True AMCG00011485
TU134703 other upstream 5645321 29625084 ~ 29625387 (-) True G107713

Expression Profile