RNA id: AMCG00011442


Basic Information

Item Value
RNA id AMCG00011442
length 2766
RNA type mRNA
GC content 0.44
exon number 19
gene id AMCG00011442
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 24915216 ~ 24957646 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTCTTCACCTGGTTCAACCTGTTTTTCAGTCAAGATACAAACGCACCTGGATTTTTCAGAATTGATTCATCATCTGGGGTTATATTTGTGAATGAAATCATTGATCGGGAGTCACTGTTAGATATGCACACTGTTGTCAATCTGACAGTGATGGCTAAAGAGAAAAACCTTAATATCCACGGAAATAAAGCTACAGCAACTGAGAATGTCATCATCAATATTGTAGATATTAACGACAACAAGCCTGTGTTCTACAACTGCACAGAGAGCGACAGTGACTGCATCTCTGAAGTGAACAGCTTCACCGGTGATATAACAGAGCATTCCTCTAGAGGTGTCCCAGTTGAAAACATGCATATACTGGTCAGAGACCTCGATAtgGGAAACCATGCCAAATTCAACTTTTGCCTGAAAGGAGAGGACAAAGACGCTTTCACTGTTTCACCCACCACAGCTATGCAACAGGCAGCAGTGCAGATTCTAGTCAAGAGCAGCAATTCAGTTGACTATGAGAAGAAAACAACGATGAAAGTGCAGatTGTTGTCTGTGACGCCGCATTTGCCGATTTCTGCTCCACTGCCACAGTGACTATAGCTGTCAAAGACATAAATGATAACAGTCCAGAATTCGCAAAAGAAACCTATTATTTGGATGTGAAGGAAGACACTAAAAATGGAACGATGCTTGCGACCATCACGGCTACAGATCCAGACACAGAAGATAAGAACCAAATAACGTTACAATATTTTGAAGTTGGGAAAACCAATGGCACTATTTACGTGAAGAATTACCAATTGCTTGACCGAGAAAAGATTGATAATTTGGCTCCCACTTTGCAAGCAACCGACTACGCAAATAACACAGGGACGACAGTGTTGGAAATCAGTATCATTGACATTAATGATAACCCCCCCAAAATTACCAGAGATGCTTACATTGACTATGTTAAGGAAGGAAGCGATCTTCATCTTTTGATCCAGGCTGTCGATGATGACAAACCAGATACGAACAACAGTGCCATTCGATACAGAATCGAACCGAGCGAGTACAGTAACAACTTCACCATCAACAGTAACACAGGAATGTTGGAAAACAAAGGTCCTTTAGACCGAGAGCACATTAAACCATCACTGAATGGAGCAATTCATCTGATTGTGACCGCATATGATTTAGGAACTCCATCTCTTTCTTCGTTGGTTAACGTGACTATTAATGTTGagGATATTAATGACAATGGACCAATATTTACATCAAGCAAATATACTTTCTATGTAAATGAAAGTGAGAGTGATGCCCATGTGGGGAACGTGTCTGCCTCAGACTCTGATCAAATGGAAAACTACAACCGAATCTCCTTCAGCATCCTAGACGGAGGTTTCAGAAGTTTCATCATCCGCACGTTTCAGGAAAACACCACAGTGTTCGGGGGGAGCATCTCCGTGGACCCTGACACCGAGTTAGATTATGAAACGGTGAAGAACTACACTCTCACCATTCAGGCGGCTGACATGGATCGGAAGAACGACAACGTGAAGGTGAAAGTGTACGTGCTTGATGTGAACGATGAACCCCCCCAGTTCACACCCCAGGATTTGCAGCCCTTGAATGTGAAAGAGAATACGACTGGACTTGGGGTGCTGAGGAAAATCAAGGGAACTGACATGGACACCAAGCACTCTCTGGTTTATGAGCTgctctcagtgtcctgtaattGTGTTAACTTCATGCTGGAAGCCTGTGAGAAGTCCTGGTTTATCTTAATGCCCAACGGAGAAGTAATAGTGAACGACAAATCTGTGATTGATTATGAAATGTGCCATGAAGTAACGATGACAATACAGGTGGTGGATGAATTCACGCAGAAAGGGAAAAACCACAGCAGTCCAGttGTGGTGCCTGAACTTGCTGCCAGGCAAAGTGAAGTTGCAAAAGTTTCTGCAACAGACCGGGATTCTGGGGTAAATCGAGCAATTACATTTCGTGTTGTCAAATCTGAGTTCATCCACGATGTCAGTGGAAGACCTCAAGATATGGCCGGCTATTTTGAAGCTGAGACGACAGCAGATAAGGACAATATGATCTACACAGGAAGCATAAAgaCGACAAAAACCCTGgacattaatttaaaaggaaGGTATTTCATAACTGTGGAGGCAAAAGACCAGGGGGCTCCATCTCACAGCACAACAATTAAACTTGATgatTCAGGGGAGACAGTGACCGAGGTTGATCCTATGTTCTATGGCTTGGCTGGCTTGGCAGCAGGCTTCATTATATTGCTGATTATCATGATTACATCTCTTGTTTGCACTCAGAAAAGctataaaagaaaattgaaGGCAGCAAATGCAATGAAGTCCACAGCATTTATTGGAACGAACAACCATCACTCAGGACAGGTAGTCCCTGGGACCAACAAGTACAACATGGAAGGGGCTAACCctgtgttaaatttaaatatcGACACGGCTACAGACCTGGGATTTGATGAGGAAGGTTCAAATGCTGACAGAGTAAGcatgAACTCCTTGGACTACAACATCGACATGAACATGACTGAAAAAGACACCATGCCTATGATGATGATCgaagaggaagaggatgaaGAGCATCCAAATGAACCTCACTACATCGAGCCTCTTGGCGCCGCACTGGCTCACCTCACCAAGAAGAGGGATTCTGAGGAGACCCACTCCTTCACCAACCCCACACTTGACACCACTGATCTAGCTGGCAATCAAGTGAGGCGATTCTGCCCTTGA

Function

GO: NA

KEGG:

id description
K16502 CDHR2, PCDH24, PCLKC; cadherin-related family member 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133612 lncRNA downstream 333042 24581956 ~ 24582174 (-) True G106817
TU133521 lncRNA downstream 1080242 23829298 ~ 23834974 (-) True AMCG00011427
TU133519 lncRNA downstream 1097673 23813857 ~ 23817543 (-) True AMCG00011428
TU133511 lncRNA downstream 1117997 23795680 ~ 23797219 (-) True G106723
TU133456 lncRNA downstream 1323907 23591101 ~ 23591309 (-) True G106682
TU133694 lncRNA upstream 29159 24986805 ~ 24991176 (-) True G106885
TU133876 lncRNA upstream 1048333 26005979 ~ 26006456 (-) True G107035
TU133878 lncRNA upstream 1051874 26009520 ~ 26012447 (-) True G107037
TU133879 lncRNA upstream 1058338 26015984 ~ 26016680 (-) True G107038
TU133880 lncRNA upstream 1059593 26017239 ~ 26018733 (-) False AMCG00011465
AMCG00011436 mRNA downstream 710893 24202755 ~ 24204323 (-) True AMCG00011436
AMCG00011433 mRNA downstream 812291 24089272 ~ 24102925 (-) True AMCG00011433
AMCG00011432 mRNA downstream 914758 23994138 ~ 24000458 (-) True AMCG00011432
AMCG00011431 mRNA downstream 935453 23966119 ~ 23979763 (-) True AMCG00011431
AMCG00011427 mRNA downstream 1080142 23829297 ~ 23835074 (-) False AMCG00011427
AMCG00011446 mRNA upstream 34702 24992348 ~ 25003276 (-) True AMCG00011446
AMCG00011445 mRNA upstream 57173 25014819 ~ 25018314 (-) False AMCG00011445
AMCG00011448 mRNA upstream 91529 25049175 ~ 25054840 (-) True AMCG00011448
AMCG00011447 mRNA upstream 97749 25055395 ~ 25071697 (-) True AMCG00011447
AMCG00011454 mRNA upstream 157911 25115557 ~ 25116417 (-) True AMCG00011454
TU133362 other downstream 1854250 23053316 ~ 23060966 (-) True AMCG00011409
TU132729 other downstream 5047314 19865614 ~ 19867902 (-) True AMCG00011356
TU132572 other downstream 5502201 19410368 ~ 19413015 (-) False G105970
TU132457 other downstream 5809947 19102293 ~ 19105269 (-) True G105890
TU132383 other downstream 6724021 18184484 ~ 18191195 (-) False AMCG00011316
TU133710 other upstream 54559 25012205 ~ 25018332 (-) True AMCG00011445
TU134083 other upstream 1549297 26506943 ~ 26516507 (-) True AMCG00011485
TU134703 other upstream 4667438 29625084 ~ 29625387 (-) True G107713

Expression Profile