RNA id: AMCG00011445


Basic Information

Item Value
RNA id AMCG00011445
length 2101
RNA type mRNA
GC content 0.38
exon number 2
gene id AMCG00011445
representative False

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 25012205 ~ 25018332 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCGGCGGCAACAACTCCTGTAGGGCATCAGGCGTCCAAAACCTCTCCTCCCGGAGCAGCCTTTGACCTGTCCCAGCCTCCCGTCATTGAAGGGTTCACCCCTCTGCCGAGGCCCAGGGAGGAAGGATTCAAGGATAAGTTGCCTGGGGACAGCAGGAGCCCTCACTTACGGACTCATTGCCTTCAAGCACGGCAAGACTCGCCAGTCTCAGCTGTCCATGAGGGCGCGTATCTTTGCCCAGGGCTTCACTGTAGTGGCTATCCTGGTGGGTGTGGCGGCGACAGCCCTGAAGCCCAGATACTGAACAGATGTGCCAGATGGGAAAGAGTGATCGTGGATGACTTGGGGACATGCCTGGCCATGGTGGTTGCTGTCTCCTGCCCTGATTCTTCTTTTAGGAAATAGTAATGATGGGGAACAAAGATACAGATCCTTCAATCTGTGTGGCTTAGAtcgatttatttttaaggaattaTAGGcacatctatttttttcttttcttttggtaaagcatttttgttttggataCAGAATGCCTTAAAATAAGTTGGTTTCCAACATCATGACTTCCCTTAATACAGAAGCCTCAGACTTTGCGGTGCACTTGTAGCTGTTCACATAAcggatttatttattctggtgAAATATGGTAAAATATGTTGTATGTTGTGCAACTGTTAAAGTTCTATAAATATACCTGTCTTGAGAATTACAGTCAATGGTGTACCTTGCATCCATACATGTTACATGTTACAACATTGAAGCTGATGGGTATGATTTGTATATGTAAGCCATTTTAGGCTATATTTAAGCTTATTGTTGAGGTAAGAGAAGAGTAATTTCAGACACAGTGTTGTAGATAATTATAAGCAGTTGCAACAGCACATAGACGGAAACATTTAAGCTTTCAAATACCAGTAGTACCAAAGGGAAAACttgattgaaatgtttaatttatatataatcttgTGCCTGCAACTTAGGTTTTCCTGTAACCTaaactttcaaatgatgtgttcTGAGAAAATGTTTCAGATTGTACCACTGCTGAAAGCTGGCATCGCTGGATTCCTCCATGTTTCCATTGCCCCTTATAAAtgactgtaaatgtaatattaataaaatgtatccatGCCAAAACGTTATTTTGAAATATGGGTTGTACCTTCAGtaaaattcaaaattacaattttaattgcgAGGGAAGTATCTACTGATCTTTGAGACCATAGCGTACAAATCATGAACTGCTTTTAATCACATAATGTACCTTCAAATAAAAGACGTGTCTATccttcaaattaatttccagCCAGGACTGTATTCCCAACACATAGGCAATATTactgcaaataataaatacagctgtTGAATAGTCTGAATAAACTAATTGTACTGCTGTATGCTAAGATTTTCTACACTGTTAATACAATCTCAGTAATACAGAAGCACTTTTGTACATTGATTGGTTCCTTGGTTAATCACGGTCTTGTTACAGTATTCGTATGCCACCACATTCAAGCAGATAgtgatacaaatacattttccatttcaacaaGACCTTGATTGTTAATTTATCTTAAGAGGGGTGGGGAATTCTAGCAGTTAATTTAAACTGTTCCTGCTCTTGTAAAATTGTGAGTTAATAAACATTCAGGTAAATTATCTTATTACaactttgttgtttatttaacacTAAGCTTTCAAAATATATCCTGTGACAATCAATACACTTTTCTTCTATATGGAGCTCATACAGATGGCAAATGAAACGCAAAACAAAGATGTTAATATATAATTCAGCTTTAATTTCTTTTTGTAAGAGgtaacagttttctttttctaaaaccGATGCATTTCAAACTACGCCATATATACTCAtgcacaaatatacatgtatgcaaCAGAAGCGTACGAGACAGTAACATGAAGAGAATCCAATGTGAATTCCAGAGATGAGTTCTCTTGCGGAGAGTTCTTCCTCGTTAATATTCAGaagactgaaactgaaagtgcAAATGAAACCGTGGTAACTGAATTGTGTCATGGGGGGNNNNNNNNNNTctgatacaaaatacaaaatcaatgtaaaCAATAA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133694 lncRNA downstream 23643 24986805 ~ 24991176 (-) True G106885
TU133665 lncRNA downstream 95622 24916164 ~ 24919197 (-) True G106862
TU133612 lncRNA downstream 432645 24581956 ~ 24582174 (-) True G106817
TU133521 lncRNA downstream 1179845 23829298 ~ 23834974 (-) True AMCG00011427
TU133519 lncRNA downstream 1197276 23813857 ~ 23817543 (-) True AMCG00011428
TU133876 lncRNA upstream 987665 26005979 ~ 26006456 (-) True G107035
TU133878 lncRNA upstream 991206 26009520 ~ 26012447 (-) True G107037
TU133879 lncRNA upstream 997670 26015984 ~ 26016680 (-) True G107038
TU133880 lncRNA upstream 998925 26017239 ~ 26018733 (-) False AMCG00011465
TU133901 lncRNA upstream 1076491 26094805 ~ 26127765 (-) True G107057
AMCG00011446 mRNA downstream 11543 24992348 ~ 25003276 (-) True AMCG00011446
AMCG00011442 mRNA downstream 57173 24915216 ~ 24957646 (-) True AMCG00011442
AMCG00011436 mRNA downstream 810496 24202755 ~ 24204323 (-) True AMCG00011436
AMCG00011433 mRNA downstream 911894 24089272 ~ 24102925 (-) True AMCG00011433
AMCG00011432 mRNA downstream 1014361 23994138 ~ 24000458 (-) True AMCG00011432
AMCG00011448 mRNA upstream 30861 25049175 ~ 25054840 (-) True AMCG00011448
AMCG00011447 mRNA upstream 37081 25055395 ~ 25071697 (-) True AMCG00011447
AMCG00011454 mRNA upstream 97243 25115557 ~ 25116417 (-) True AMCG00011454
AMCG00011456 mRNA upstream 663601 25681915 ~ 25705668 (-) True AMCG00011456
AMCG00011457 mRNA upstream 711155 25729469 ~ 25730537 (-) True AMCG00011457
TU133362 other downstream 1953853 23053316 ~ 23060966 (-) True AMCG00011409
TU132729 other downstream 5146917 19865614 ~ 19867902 (-) True AMCG00011356
TU132572 other downstream 5601804 19410368 ~ 19413015 (-) False G105970
TU132457 other downstream 5909550 19102293 ~ 19105269 (-) True G105890
TU132383 other downstream 6823624 18184484 ~ 18191195 (-) False AMCG00011316
TU134083 other upstream 1488629 26506943 ~ 26516507 (-) True AMCG00011485
TU134703 other upstream 4606770 29625084 ~ 29625387 (-) True G107713

Expression Profile