RNA id: TU133710


Basic Information

Item Value
RNA id TU133710
length 4774
RNA type TUCP
GC content 0.40
exon number 2
gene id AMCG00011445
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 25012205 ~ 25018332 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCTTCCTGTTTGCAAACATGGCGGCGGCAACAACTCCTGTAGGGCATCAGGCGTCCAAAACCTCTCCTCCCGGAGCAGCCTTTGACCTGTCCCAGCCTCCCGTCATTGAAGGGTTCACCCCTCTGCCGAGGCCCAGGGAGGAAGGATTCAAGGATAAGTTCATCAGAAAGACGAAGGAAAACCCGTTTGTGCCGATAGGTTGCCTGGGGACAGCAGGAGCCCTCACTTACGGACTCATTGCCTTCAAGCACGGCAAGACTCGCCAGTCTCAGCTGTCCATGAGGGCGCGTATCTTTGCCCAGGGCTTCACTGTAGTGGCTATCCTGGTGGGTGTGGCGGCGACAGCCCTGAAGCCCAGATACTGAACAGATGTGCCAGATGGGAAAGAGTGATCGTGGATGACTTGGGGACATGCCTGGCCATGGTGGTTGCTGTCTCCTGCCCTGATTCTTCTTTTAGGAAATAGTAATGATGGGGAACAAAGATACAGATCCTTCAATCTGTGTGGCTTAGAtcgatttatttttaaggaattaTAGGcacatctatttttttcttttcttttggtaaagcatttttgttttggataCAGAATGCCTTAAAATAAGTTGGTTTCCAACATCATGACTTCCCTTAATACAGAAGCCTCAGACTTTGCGGTGCACTTGTAGCTGTTCACATAAcggatttatttattctggtgAAATATGGTAAAATATGTTGTATGTTGTGCAACTGTTAAAGTTCTATAAATATACCTGTCTTGAGAATTACAGTCAATGGTGTACCTTGCATCCATACATGTTACATGTTACAACATTGAAGCTGATGGGTATGATTTGTATATGTAAGCCATTTTAGGCTATATTTAAGCTTATTGTTGAGGTAAGAGAAGAGTAATTTCAGACACAGTGTTGTAGATAATTATAAGCAGTTGCAACAGCACATAGACGGAAACATTTAAGCTTTCAAATACCAGTAGTACCAAAGGGAAAACttgattgaaatgtttaatttatatataatcttgTGCCTGCAACTTAGGTTTTCCTGTAACCTaaactttcaaatgatgtgttcTGAGAAAATGTTTCAGATTGTACCACTGCTGAAAGCTGGCATCGCTGGATTCCTCCATGTTTCCATTGCCCCTTATAAAtgactgtaaatgtaatattaataaaatgtatccatGCCAAAACGTTATTTTGAAATATGGGTTGTACCTTCAGtaaaattcaaaattacaattttaattgcgAGGGAAGTATCTACTGATCTTTGAGACCATAGCGTACAAATCATGAACTGCTTTTAATCACATAATGTACCTTCAAATAAAAGACGTGTCTATccttcaaattaatttccagCCAGGACTGTATTCCCAACACATAGGCAATATTactgcaaataataaatacagctgtTGAATAGTCTGAATAAACTAATTGTACTGCTGTATGCTAAGATTTTCTACACTGTTAATACAATCTCAGTAATACAGAAGCACTTTTGTACATTGATTGGTTCCTTGGTTAATCACGGTCTTGTTACAGTATTCGTATGCCACCACATTCAAGCAGATAgtgatacaaatacattttccatttcaacaaGACCTTGATTGTTAATTTATCTTAAGAGGGGTGGGGAATTCTAGCAGTTAATTTAAACTGTTCCTGCTCTTGTAAAATTGTGAGTTAATAAACATTCAGGTAAATTATCTTATTACaactttgttgtttatttaacacTAAGCTTTCAAAATATATCCTGTGACAATCAATACACTTTTCTTCTATATGGAGCTCATACAGATGGCAAATGAAACGCAAAACAAAGATGTTAATATATAATTCAGCTTTAATTTCTTTTTGTAAGAGgtaacagttttctttttctaaaaccGATGCATTTCAAACTACGCCATATATACTCAtgcacaaatatacatgtatgcaaCAGAAGCGTACGAGACAGTAACATGAAGAGAATCCAATGTGAATTCCAGAGATGAGTTCTCTTGCGGAGAGTTCTTCCTCGTTAATATTCAGaagactgaaactgaaagtgcAAATGAAACCGTGGTAACTGAATTGTGTCATGGGGGGNNNNNNNNNNTctgatacaaaatacaaaatcaatgtaaaCAATAAACATCCCACTTGCAGTTTAGTTTCATGGAGTGTCTGAACCAATTTTGTTCTTCCACATTATAGGGAAGTTCCCCCTCATTAAGTATATGTGGTCGGAAATCTTGTCGATGGATACTGAACACTCTTAGCATTGCTTTTGATTTCACATTTTTTCGACTGTGAGGATGagtacaaaatatgtaaacCAGAACTTGGGGGGATGAAGGCTGAGAGAGCATGCGCTTGTGTCTTCCTgctttggaaatacattttcagtaggAAGATTCCCTGGTGATGTTTGTGATGCACTGCGAAGCTGTAGTCATTTGATGGGAATTATAACACAAAAGcaagaagagaaggaaaacaaaattgtccgaaaaagaaaagcaggtcTTGGGGTTGAAGAGGCACTCATTTTCTGGCAGTAGAGGAGCAAGGTTCTTGGAAAGGCCACAAAATACGACAtatgggaacattaaaaaaacacttgacaATGTCTGGTGATTCTAGGTGTAATCTTACTATCCTATAGTAATAGCAAACAGACCTGTTCAATAACAGCATTGTGTTTTCTACAACATTACACTGGTGTAGTATATATTCTCCCTGTAGGGAATACCATATCTCGACTAGAAGCATCACAATACTACAAAGATGACCACAACTCGGCACACTGGTCAGCTAGACCTATGACAGAAACGCTTATTTATGTCATACTCTTAAGTCAAAAGGTTTTCctgtaagaaaatgaaaatgcttcaCAACTTACTGATAATATGCATGTAAAAGCCCTTTAAAGGTCACTCAAAGTGGTTTACAAGTAATTGGTGAATCGGCTTTCAAAACTAGGTCAAAGTAAAGTGTGAgacagtggtgtgtgtgtttgtgtggagtGGTGGGGGGTTGGTTAAAGACCAAGTTTGTCTACCATACTTTGGCAAATACAACAAGGCATTACATGCAGTGCGGACGGAGGGACTAGCAGCAGACccgtgtttttcaagcacacaGACCCTGATCAGTGGACGGTGCCATTTCAAAGGAGATAAAGTAGACCTTGGCAAGAGGCCGATGGTTTTATTTTGCGCTACCCACAGTCTCCATGATCAAAGCCAGTCTCATGATGTCCGAGAACAATTTCCATTTTGAGAAGgacatcaatttttattttcttcatcgaatttgttttaaaaaatcgCTTTCTGTGGTGTGACAGACAACGCACAACATCTACGCATGCAGCTCTTCCGCCAACCGTGAGATTTTCCTCACTAAAAAGCAATATTGACAAGCAGTGTTGTTGTATTTCAAATCTAAGAAACTTGGTATCAAAGAACAAGCCACCGTGAAATTATGAGAAAGGGACATTTTTTTGGGACCTCTtgagaaattgtgttttttaaatccattagaCTGTTGAAAACCCAGgatttgtaacattttgtttgcagaGTTGAGGTATATCTTCAAAATTCAATGATGTAAAGAACATTATCACCTGGAAAATAAGGATGACAGGCGTATATAGTTAAGCAGCCAACTGAAATAGAAGCAGAACAGTGTCTGAGGCCAGGACTCATAAAAAAGGTGCGTTTTCTTTTTAGGGGGCAGTTGCAAAAAATCActaatctgtaaataaaaaataaaaaagtttctCTCTTGGGTCTTATGCTGTCTTACCTTAAGCTAGTTAACAGCAACAGTACCACACTTAACCTACTGTTATAAAGCATCAATCCCAATCCTATTACAGGCAGCAAAATGTGAGCATCTACAGCAGCTTATGGCACTGGTGAATTGAAAAGACAAGAATTACAGTACATTGGAGAGAAAACAGTGTGTCAAAAAGGAAACACTTAAAGATGCAGTATATCACTACTATATAAAGATCAGGCAGCAGTGCATTGGCAACTTGAAGTGGATGGTAGGCACATTTTCCCAGTTAATAGATTATTATACAAGTAAACAACGCAGATTGTAATGAATTCAAGGAGGGGAGGGACCTCAATTGGAGGAAATGTGCATGAATTTCATGTACAACACCTCCACCCTCTGGTTAGGAATACAACCGTGTTCTCTTTTACAACTGCAGCAATTCAAAGGCAGACTGCGGACTCCGATCCTCATCTGCACGGTGTCTGAATGCAGCTTGTGTTAACTGCAGCAGAATAATTTCTTAATGTGGTTCGTAGACTAGATCAAGGGAGAAGGCTGTGAAGTGTGAATTACTGCAGAAAGCAacctttctttcaaaaataaaagaatactgCATCTTTAGGTGAagggaacaaacaaaaagaaaaacattaaggTGCTTGAAAGAAACATGTGTAACAGATTAACTTTCCTTGGTCCAGGCAACAAAGACGAGGCAGTATAGCTAGTACTACTAAAGGAGTTAGAGAGCGTGATTCGGGGAACTGGGGAGTGAGTGGGCGGCCGAGAGAGATGGCAGCTCCAGCCTAGCGCACCAGAGGCGTCTGTTTGAGGGTTATGAGCACGGAGCGCATGCGAGACACGTCCTTGGACTGCTTGTTGGTTTTGGGGTTGAAGTCGCACAGCCGTGCCACCCTCTCCCACTCTGACCCCGGGGTGTCTTCGTCACATTCTTTGAGGAAGGCCTCTTCCGACG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133694 lncRNA downstream 21029 24986805 ~ 24991176 (-) True G106885
TU133665 lncRNA downstream 93008 24916164 ~ 24919197 (-) True G106862
TU133612 lncRNA downstream 430031 24581956 ~ 24582174 (-) True G106817
TU133521 lncRNA downstream 1177231 23829298 ~ 23834974 (-) True AMCG00011427
TU133519 lncRNA downstream 1194662 23813857 ~ 23817543 (-) True AMCG00011428
TU133876 lncRNA upstream 987647 26005979 ~ 26006456 (-) True G107035
TU133878 lncRNA upstream 991188 26009520 ~ 26012447 (-) True G107037
TU133879 lncRNA upstream 997652 26015984 ~ 26016680 (-) True G107038
TU133880 lncRNA upstream 998907 26017239 ~ 26018733 (-) False AMCG00011465
TU133901 lncRNA upstream 1076473 26094805 ~ 26127765 (-) True G107057
AMCG00011446 mRNA downstream 8929 24992348 ~ 25003276 (-) True AMCG00011446
AMCG00011442 mRNA downstream 54559 24915216 ~ 24957646 (-) True AMCG00011442
AMCG00011436 mRNA downstream 807882 24202755 ~ 24204323 (-) True AMCG00011436
AMCG00011433 mRNA downstream 909280 24089272 ~ 24102925 (-) True AMCG00011433
AMCG00011432 mRNA downstream 1011747 23994138 ~ 24000458 (-) True AMCG00011432
AMCG00011448 mRNA upstream 30843 25049175 ~ 25054840 (-) True AMCG00011448
AMCG00011447 mRNA upstream 37063 25055395 ~ 25071697 (-) True AMCG00011447
AMCG00011454 mRNA upstream 97225 25115557 ~ 25116417 (-) True AMCG00011454
AMCG00011456 mRNA upstream 663583 25681915 ~ 25705668 (-) True AMCG00011456
AMCG00011457 mRNA upstream 711137 25729469 ~ 25730537 (-) True AMCG00011457
TU133362 other downstream 1951239 23053316 ~ 23060966 (-) True AMCG00011409
TU132729 other downstream 5144303 19865614 ~ 19867902 (-) True AMCG00011356
TU132572 other downstream 5599190 19410368 ~ 19413015 (-) False G105970
TU132457 other downstream 5906936 19102293 ~ 19105269 (-) True G105890
TU132382 other downstream 6821010 18184484 ~ 18191195 (-) True AMCG00011316
TU134083 other upstream 1488611 26506943 ~ 26516507 (-) True AMCG00011485
TU134703 other upstream 4606752 29625084 ~ 29625387 (-) True G107713

Expression Profile