RNA id: AMCG00011446


Basic Information

Item Value
RNA id AMCG00011446
length 2050
RNA type mRNA
GC content 0.45
exon number 10
gene id AMCG00011446
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 24992348 ~ 25003276 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGCTACGTCACGATACGTTACGTTACCGGATGTTTTGTTCCCCTGACTTTTTCCGTTTAACTGCAGTAATGGGGCCGTAGAGCAACAAAAGTCTTTCTACGGGAAAGGAAGTAGAAATTAAACCCTTCTCCTTTTCAGAGCACGTCTGTCGGTATATCATCCTGCAACACGTAGACATTATGGTGGAAGGAATAATTGCTCTGGGCTCTGGCTTTCGAATTTTATCGTTCAACGCCAAGTGAAATAGTATTTtgtcctccacctcctcctgctGTCAGGGCGTAACGTCAGTTCCGGTGTGCTCGGTGCGGGGTTTGGTGAGGCAAGATGGCGGCGCCAGAGGAACAGGAATTATCTCAGGAGCAGACTGAGAAACTCCTGCAGTTTCAGGCAGCTGTACAGGACAGACTCAATGAACAGGAAGGAGTACCCAGTGTGTTCAACCCACCCCCCTCCAGACCGCTACAAGTCAACACCGCAGACAACAGAGTCTATAGCTACATTGTTTCAAGGCCGCAACCCAGAgGTCTGTTAGGTTGGGGATACTATTTAATAATGCTTCCATTCCGATTTACGTATTACACACTACTGGACATCTtcaggtTTGCTCTGAGGTTTATAAGGCCAGATCCCCGTGGTCGTGTTACAGATCCTGTAGGCGATGtggtttcatttattcataGTTTTGAAGAGAAGTATGGTAGATCACATCCAGTGTTTTACCAGGGAACATATAGCCAGGCATTAAATGATGCCAAACGTGAACTTCGCTTTTTGTTGGTTTACCTTCATGGAGATGATCATCAAGACACTGATGAGTTCTGTCGCAACACGCTGTGCACAGAAGAGGTTCTGAATTTCGTTAATGCTAGAATGCTTTTCTGGGCTTGTTCTTCCAGCAGGCCTGAAGGTTACAGAGTGTCTCAGGCCCTGCGAGAGAATACCTACCCTTTCCTGGCCATGATCATGCTGAAGGACAGGAAGATGACCGTAGTGGGACGGCTAGAAGGCCTGATCCAGCCCGAGGATCTCATCAACCAGCTGACCTTCATCATGGAAGCCAATCAGACATACCTGGTGTCCGAACGAATGGAGAGagaggagaggaaccAAACGCAGGCACTGAGGCAGCAGCAGGACGAAGCCTACCTTGCCTCCCTGCAGAAGGAGCGCAAGTCTGAATGTCTTCCCCCGGAGCCACCCCTGGACGATCCTGACAGTGTCAAAATAGTCTTCAAACTGCCTAATGATTCCCGGGTGGAGAGGCGATTCCTGTTCACACAGTCTTTAACGGTGATACACGACTTCTTGTTTTCCTTGAAAGAAACTCCTGAGAaatttcagattgtgactaaCTTCCCACGCCGGGTCCTGCCCTGCCTCCCGACAGAGGCTCAACCCAACCCCCCCACGCTGAAGGAGGCCGGTCTCAGCCGCTCCGAGGTTCTGTTCGTACAAGATCTCACGGACGATTGATAAAAACCCCATTTCACCGTAAACGtggaaagtattttttatgttttttttggtttgttttatggtTATTGCGCACAAGGGATCACTGAATACGAACGAACGagccaacttttttttttttctccgaccccccccacccccccatgtTGGACATGTGGCCAAGTTACTCTGTGTTTAAATTCTGTGTAAAGAAAAAGGccgaaatatttataaattgaaaaagcaaaaaaaattatGTTACGGTGAACTTTTCATCTCCTAAAGCCCAGAACTGACCATATgcctaatattttttttatgcaatcccagtttaataatataaatgtatatgttatgAAAAGACCAAAGGAGGGTTGGTGTTTATATAATGGAGTTGGACTGCTTACagttcttaaaacaaaatgaataaaaacaataccacAGGATTTACCAGTGGTTCTAGCCTATATAGCATAGTACAAGTTCGCCTATAGTGTGCCTGTGGTAATACATAGATGCctattttgccattttaatatgtgAATGGGCTGGTCATGTTAAGATGTAATTTTTTTCCAACTAtaaattaaacctt

Function

GO: NA

KEGG:

id description
K18726 FAF2, UBXD8; FAS-associated factor 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133694 lncRNA downstream 1172 24986805 ~ 24991176 (-) True G106885
TU133665 lncRNA downstream 73151 24916164 ~ 24919197 (-) True G106862
TU133612 lncRNA downstream 410174 24581956 ~ 24582174 (-) True G106817
TU133521 lncRNA downstream 1157374 23829298 ~ 23834974 (-) True AMCG00011427
TU133519 lncRNA downstream 1174805 23813857 ~ 23817543 (-) True AMCG00011428
TU133876 lncRNA upstream 1002703 26005979 ~ 26006456 (-) True G107035
TU133878 lncRNA upstream 1006244 26009520 ~ 26012447 (-) True G107037
TU133879 lncRNA upstream 1012708 26015984 ~ 26016680 (-) True G107038
TU133880 lncRNA upstream 1013963 26017239 ~ 26018733 (-) False AMCG00011465
TU133901 lncRNA upstream 1091529 26094805 ~ 26127765 (-) True G107057
AMCG00011442 mRNA downstream 34702 24915216 ~ 24957646 (-) True AMCG00011442
AMCG00011436 mRNA downstream 788025 24202755 ~ 24204323 (-) True AMCG00011436
AMCG00011433 mRNA downstream 889423 24089272 ~ 24102925 (-) True AMCG00011433
AMCG00011432 mRNA downstream 991890 23994138 ~ 24000458 (-) True AMCG00011432
AMCG00011431 mRNA downstream 1012585 23966119 ~ 23979763 (-) True AMCG00011431
AMCG00011445 mRNA upstream 11543 25014819 ~ 25018314 (-) False AMCG00011445
AMCG00011448 mRNA upstream 45899 25049175 ~ 25054840 (-) True AMCG00011448
AMCG00011447 mRNA upstream 52119 25055395 ~ 25071697 (-) True AMCG00011447
AMCG00011454 mRNA upstream 112281 25115557 ~ 25116417 (-) True AMCG00011454
AMCG00011456 mRNA upstream 678639 25681915 ~ 25705668 (-) True AMCG00011456
TU133362 other downstream 1931382 23053316 ~ 23060966 (-) True AMCG00011409
TU132729 other downstream 5124446 19865614 ~ 19867902 (-) True AMCG00011356
TU132572 other downstream 5579333 19410368 ~ 19413015 (-) False G105970
TU132457 other downstream 5887079 19102293 ~ 19105269 (-) True G105890
TU132383 other downstream 6801153 18184484 ~ 18191195 (-) False AMCG00011316
TU133710 other upstream 8929 25012205 ~ 25018332 (-) True AMCG00011445
TU134083 other upstream 1503667 26506943 ~ 26516507 (-) True AMCG00011485
TU134703 other upstream 4621808 29625084 ~ 29625387 (-) True G107713

Expression Profile