RNA id: AMCG00011447


Basic Information

Item Value
RNA id AMCG00011447
length 4336
RNA type mRNA
GC content 0.50
exon number 14
gene id AMCG00011447
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 25055395 ~ 25071697 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AACGACTTCACTCCGACTTCAGGGCAGGGAAGCGCGGAGCCGCCATTTTTAGTGAGGGTGGCAAGAGCCAGTGTGAGTCAAGGTACTGCCGGTCCGACCCAGCGCAGCAATGGCCGTGACGTCACCGCTTGAAAAGGCGTGGAATAGAGAGCCAGCAGGACAGGAGGGGAAAGAGCACGAAAACTGTGATTAATGTGAGACATCGGCTTCACGTATTTCAGGACACACcggggatagagagagagagagagagagagagatcgacGTGGGAAACTTTAGTGGCAGCAGAGCAGGAACCACAGACTGAGCCGAGGAAGGCGCTCTACCTGGAGGAAGACAGGCAGGTAAAGGAAGCGCGCCGCCCGCTTGCGGAGACGACACTTTCGCGGCCGTCATGCGGGGCAGGGAGGCCACTGAGCCGCCGAGAGAGACGCACCGCAGCACAAACTTTATTTCGGCCGATTTCGCTTCTCCCCACATCTTCAGCACACCAGCGTGTTAACAACTACCGTCAGGGGCTCGCAACTGCGTTATTAGGATTTGGTACAACCCCAAGCAAAGAATAAGAAAAGAGAGCCATTCTACAGATACCCCAAACTGAACGAAACTAGTTTGTCCCGATTGGACAGGACAGTGACAAGGACGGGTATATGAAGGGAAGGGtacgataaataaataaaaataaataaacagaaatgcgCTCCGGGGTTTAGAAATGAAACTTCAGCTATGACTGTCCGTGTTGCTGTCGGCAAGGTACGCCACGGGTTAAGACTGGAGAAAAGTTGTCAAGAGAAGAAAAACCCGGAATACAAAGTGACAACAGTATACTACTGAACACAACATACGCGAAACGACAGAAGCAAGTTCAAAGAAAACGGCGAAGAAAGGATTTGTGGAGATGGGGTGTGTGTAACTTTGGTTGGACCGGATCGTGGACCTCTCCCACCAGACAGACCAGCCAAGTGAAATCGGATAAAGGGAGCTCTTCACGCAGCAGAAACGCGTCTGGAAATGCTGTCCGCGATCATGAGGAGGTGGTTTTGCAGGCCTAAGAAGTCTGACCGACACCCCCTGGCCCAGTTCTATTATGCTGATGAAGAGGTGAATCGTGTCACAGCAGAGCTCAATGGAGTGGACCTGCGCAAAGACCCCCAGAAATACCTGGTACTGCTCAGCCAGCTCAGAATGAGCCAGGACCGCATGTTGAGGGCCATCGAGCTGGTGATGGAGGACTGCATCTCTGCCCAGAGACAGAGCCGGGACTATCACGTCAAGTTCCCAGACGAAATCCTTCACGAGAACCTGGGAGTGCAGCTGTGGTTTGCCGCTGAGTGCCTGTCAGTGGGCTCCTTCCTGGAGGTGCGCGAGGCTGAGGGGCTGCTGTTGCGCCCCCTAGCAGAGCAGCTCCTGCAGTGCCTGGAACATGCCCGCCTCCAGCTCCGAGAGCAAAGCCTGAACGCCCCGCACAGCTACAGCCCTGAGCTCCGGCAGGCTCTGCTGCAGTATGACCGAGTCTTCTCCCAGTTTGAGCTCAGTTATATCTCCACAGTGATCCCGCTGAAGTCAGCCGAGGAGCTCCAGAGGCAGCAGGAGATTGTGCTGGGCTACTTAAACCAGGAGTTGATTGACGGCTACGAGCCGCTGGTCATGTTCACAATCCCCAGACTGGCTATTATATGCGGCCTGCTGATTTTCCCAGATGGCCCTCTGAACCTCCAGCAGGGACCAGAGGGTATGTCCAGCCTCTTCAGCCCCTTCTACTCCCTACTGCAAAAAATCAGGGATTTGCTTCGCATCCTCACCCAGGAGGAGCTCCACTTCCTGGAGAGGAGCCTGTGTGCGGCGGAGTCCAGCGGCTTCCTGTGCGCGGCGCCCTCGGACGGGGGACGGAGCTCCTTCCCCAGCAGCCTCCCTCCGGTCGACTACGAGCCAGGGTGTGAGGTGCCCGGGCACACGTCATTACAGCCTCCCTCACATGTCTTCCCTGGCCATCCCTGCTTCTCCAGCACCACAGAGAGCCAGTATGGCAACACTGGCATCTGGCCCAGCCATCCCTATTGTCAGGAGGGGGCGGCAGACCACAGACAGCCCCCTGTTTCTCCAGACAAGCCGGACAGTGCTTTCTATGGGGCTGCCTGCTCTCTCCACAGCCCTGCCTTCCAAGAGCAAGGGCAGCCCTGCCAGCTGGTACAAAGCGAACGACAACCACAACATGGACCAGCTTTGGTGCCCAGTTCTGACCTGCAGCCCCACGTCTGTCTGAGCGGACAGGGCTCCGGGGAGCAAGGGAGGTGTGACGCCGATTCCTCTGCTCCGGTCACAGACAGGTTTTATTACTTCCGCTCTCCTGTGGATCGCAGCAGAGCTGGGGCTGGGGCCGGCACCGGCACAGAAggcgaggggagggagaggcGATGGCGGCACAGCGTGATGGCACACAGCTGGTACTCTGGGCAGCCACTTCCCACGGCGCCATCCAGACCAGCCTTCAGAGAAAGACGgTTTGACAGGGTGTCCGAAAATGGCACCGGCACCAGAGGCCCAGTGGACCACGCCACACGCAGGGTGAGGACAGAGCTGCGGGCACGATACAGCAGCAGCGGTGACATGATCCACAGGCTGTTTGTGTGCATCTCAGGAGTTGCAGACCAACTACAGACAAACTTTGCCAGTGACATGCGAGCGATCCTGAAGTGCGTGTTTGAGCTCATCATCTCCCGTGACGAGACATGGGACAGAGCCCGGACCAACTCGGCTGGAgaggacggagagagagagcaggaggaagacTCGAGTCCTGGGCCGGTGGAATGTGAATTGTGTGAAGACCTGAACACTGGAGTCGCCGATATGGGCAACATAGGAGGTCCACCGGTCTGGGTCCCTGACAGCGCCTGTAACCACTGCACCGCCTGCCAGGCCCCCTTCACCCTCCTGCGCAGACGCCACCACTGTCGAAGCTGTGGCAAGATTTTCTGTTCGCGATGTTCCCCCCATGAGGCACCACTCCCTCGCTTTGGTCAGATGAAGCCGGTTCGAGTGTGCAATCACTGTTTCAACTTCCATATTGTTGGAGAAACAACACCGCTTTAATGAAAGCTATAGGAAAATGACTTCATctgggggagagaaaaaaaaaaaaaaacatttttggggATCTGCATAGACACATCTGGACACTCATCCAGACAGACAATGAGAGCTGTGTGTCAGCATTCCCTGAATATCACTTGTTCTGCTCGGTTGCTACTGGCCACTCAAGGCAACTGTTGAAATGCAGAATAACACTTTTGGTAGTATCTCTTCCTGTCATTCACAGAATTCAAATTcccatgcatttatttccagagTGTTGAAAATCTTCAATTTCTCCTTTCTTGACACAcatctctgttttatttttaaagtacaatTCCTAAACCTCCTATAGACAAATTCTTTTACAGGTTTGTTTTCTACTAATCCTGAAACCTGGGTTCtgcaatttgtgtttttcagtcggattggaaagaaaatgtatgtggCAAATCTGTTTTGATATTTGTCaaattttcctttttgaaattcTGTAATTACGGATTTGTGATCCGCAATGTTTGCGaacccccttttgccaccagtGATGTAATGATGTAATTTATAGTTTAGTCGCACAattaaagcatattttattaaaggatatcgaaattatatttaaaaaggatgcatgtttgttttcaaatacaaatctaaaactAAACGTGTGTGATGTACTCTAATGATGGGTGGGATACAGGATCAGTCAATCAAAGCCTGCATATTGACCCTTGGGTGCTATGGACAAAAAACCTATATGTGGGTCACTGAATTAAACATATTTGCAGATattcaaaacaatgaacaaacaaaatgtatctaacagaaatgtattgtgATTTACCAACAAGCTGTACATCACGGATTATgcttttcaaattaactatCTGTGTACACTTATTAACATGTAATATACAATATGACATGACAGTAATTCCAATAGGATTTACGTGGAGGACAccattttatagttttatattgcCACATAATAGGTCTCAtatcaacttttttttattttcacacaaatacattgaaacTGATCAATTTGGTTCAGGTAGATGTAggctatatactatatattcaCTAAAAATGCATCACTCTCCTACCTCCATTTACCCCTTATGTTATCACCATGAACAGGCTGACGAGATCTCTTTCCGATCACGGGTTTTTTGAATTTCAAACATCTGTTTTCCCGCCTgcctgtatttttaaacagatcttaaaatgtcacatgtataatgtgtttgtgtgtcac

Function

GO:

id name namespace
GO:0005768 endosome cellular_component
GO:0016020 membrane cellular_component
GO:0043167 ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133694 lncRNA downstream 64219 24986805 ~ 24991176 (-) True G106885
TU133665 lncRNA downstream 136198 24916164 ~ 24919197 (-) True G106862
TU133612 lncRNA downstream 473221 24581956 ~ 24582174 (-) True G106817
TU133521 lncRNA downstream 1220421 23829298 ~ 23834974 (-) True AMCG00011427
TU133519 lncRNA downstream 1237852 23813857 ~ 23817543 (-) True AMCG00011428
TU133876 lncRNA upstream 934282 26005979 ~ 26006456 (-) True G107035
TU133878 lncRNA upstream 937823 26009520 ~ 26012447 (-) True G107037
TU133879 lncRNA upstream 944287 26015984 ~ 26016680 (-) True G107038
TU133880 lncRNA upstream 945542 26017239 ~ 26018733 (-) False AMCG00011465
TU133901 lncRNA upstream 1023108 26094805 ~ 26127765 (-) True G107057
AMCG00011448 mRNA downstream 555 25049175 ~ 25054840 (-) True AMCG00011448
AMCG00011445 mRNA downstream 37081 25014819 ~ 25018314 (-) False AMCG00011445
AMCG00011446 mRNA downstream 52119 24992348 ~ 25003276 (-) True AMCG00011446
AMCG00011442 mRNA downstream 97749 24915216 ~ 24957646 (-) True AMCG00011442
AMCG00011436 mRNA downstream 851072 24202755 ~ 24204323 (-) True AMCG00011436
AMCG00011454 mRNA upstream 43860 25115557 ~ 25116417 (-) True AMCG00011454
AMCG00011456 mRNA upstream 610218 25681915 ~ 25705668 (-) True AMCG00011456
AMCG00011457 mRNA upstream 657772 25729469 ~ 25730537 (-) True AMCG00011457
AMCG00011459 mRNA upstream 708265 25779962 ~ 25781092 (-) True AMCG00011459
AMCG00011463 mRNA upstream 805799 25877496 ~ 25898827 (-) True AMCG00011463
TU133710 other downstream 37063 25012205 ~ 25018332 (-) True AMCG00011445
TU133362 other downstream 1994429 23053316 ~ 23060966 (-) True AMCG00011409
TU132729 other downstream 5187493 19865614 ~ 19867902 (-) True AMCG00011356
TU132572 other downstream 5642380 19410368 ~ 19413015 (-) False G105970
TU132457 other downstream 5950126 19102293 ~ 19105269 (-) True G105890
TU134083 other upstream 1435246 26506943 ~ 26516507 (-) True AMCG00011485
TU134703 other upstream 4553387 29625084 ~ 29625387 (-) True G107713

Expression Profile