RNA id: AMCG00011448


Basic Information

Item Value
RNA id AMCG00011448
length 2582
RNA type mRNA
GC content 0.45
exon number 6
gene id AMCG00011448
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 25049175 ~ 25054840 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGAAGCGTGGGGAAGGTGACGTGAACCCGAGACAAGGGAGAGTTAGTGCGGGGCTGTGGAGCAAGCCAGGCGCAATTTACGGATTGTTTGTTCggtgctttaaaacaaaacaaaactttaaaatggaaatgaataCTTGCAACATCCAGGTCCTGCTGCAAGCGGCCGAATATCTGGACAGGCGAGAACGGGAAGCCGAGCATGGATACGCGTCTGTGTTGCCTTTCTACGGCAAAGGGGTTTCTGATAAGAGAAGCAAGCAAAAACCTAAGAAGAATCCAGATAACATCAGATCCGTTCATAATGAGCTGGAGAAACACAGACGGGCCCAGCTGAGACACTGCCTGGAGCAGCTGAAGCAGCAAGTGCCTCTGTCTTCAGACTCCATGAGGAACACCACACTGAACCTGCTCCGCCGGGCGCGTCTGCACATCAAGAAGCTGCAGGAGCAGGACGAGCGGGCGGAGCGCTTAAAGGACCGGCTGCGCTGGGAGCAGAGGGGTCTGCGCGGGCGGCTGGAGCAGCTGCTGGGGAGCGCCGAGAGGACACGCAGCGACAGCCTGGGGTCCACACTGTCCTCCGAGAGGTCCGACTCCGAGCGAGAGGATGTGGAGATCGACGTGGAGAGCACGGTGTTCGTGTGTGTGGAGTCTGAGCGACTCTCCAGCCCGCAGAGGGAAGGAGACCACAGCTACTCCACTCCCGGACGAGCTTGGCTATGACCGAGCCCCATCTGCTGgtcagaaacaaaactgaacaaaaactcccccccccaccccaaaaaaagaaaaagtacaaaaaaaaaaggaggaggGCAGTGGGATGTGCCACCGCAGGAATGAAAATGCTCCAGGTTTCAGAGGCACATTCTGCACTGACTCTGAAACGCAACCATTGCACAAAGACCAACTGAcgtgcatttttctttttttctttttttttgtcttgtatttTCAATCGACTTCTGAGCAATTTATTTGGGCAGGCACCACGCACAGATCCTCGGGGATCATTGTTGTCTGAGGCAATCTGATTACAGGTTAAGTTTCCTTTAAGGGGAACCTGTTAAAGAAGTTCCAACTTGCAAACAAGTACTTGGATTTGGTTGGCAGCACTTTTCGCAGGGAAAGGGCAAATTGTCCTAACAACATGCATCTTGTTGAATAAGACAaaagttccttttttttttttttttgtaatagtaGGCCAATGTGTGttagcaatattttttttattcatagtTTAATTTACAAGGACAGTGTGTTGCACACTGTAGCTTCCTCTTACGTTTACAAGAGGTACTTGGTTGTATAACAAAGGAGCAATATGATGCAGGTACAGTGTAACTGTACGGTACCTTAAAAGCACAGCGGTCTTTGATAGCTCTCCTGCGGACTTGTGTAGGAGCGCTGCTATCAAGTGAATCCAGTATGCAATGTTCTCAAGCACTTAATACTTCTTCTGAAATGACAAAACCCTCATTGCTCACTGGTGAGCCCAGTTGTTTTAGGGGCAGTCTGTCCTGCAACATCCTCaagacagattattttatttttataaaattgcTTTGTGCCTTTCAAGGAAATGGATGCCAAGTAGGTCCTCCGCATCCAAAGAAAAGGGAAGTTAAATGCTAGTAGTTTCGGAGTAGGTGCAAAACATCAGTGCTGAATTCTCCCCTTTGTAATGAAGTAACGATAGGCTGAAGTTTGCAATGGCTTCtgggtgaaaataaaaacctcctGTTGGGTTTTGAAGTATGCTTTCCACTGAGCTGTAACCTTCACTGCCTGTAGGGCCAATGGGCACCTGTTCTCAGGTTTATTTGACTATATTAATGCCTTGACCCTGCTTGAACCTAGTTTAATCGGTTTGCAAGGCATCTGAACATTTCGATGGATGGTGAATAGATGTAACCACCTGAAACACCATTTCTCTGCAGCCTTTTCAAAcggaggggaaaaataaaactgaaaacaaacggacctctttaaaagaaaaacaaagtgaaggTTACCACAGGGCCATCGCCAATGTGAAATCTACTGATCTAGTTAATGAGCAGTTCCACTACAGCACCGACACACTTTTGCTCCACAAAAGAATGAGCTGCTGACTGTACATGTAAAGTTAGATGAATTGGTGATTTGTCACCTTTTGTTTTTCCGGTGACCAGAAGCATTATTGTATTAAGTCTGATTAGGCAGTCATCTCCTTACAACCTAACTTGCACTGAACAAGAGTTGGCGATTATTTTGTTTGGGATTTGAAACCAAGCAAGCTTTTCTGatagattttatatttacatgtgtatatgtatattttttctataaacattaaattgagatttgtttattttttatcttgtgTTTATAGTActtagggctggtttcacagacccagatgtTATGGACTAGCTAGTGTAGTTTACGGAAGAGGAGTCTTGGACTAGTCCTAATCGAGCTCTGTGAAAAGCAGTTGGTTGGTTTCGACCACCCTGATCAGAACAATGTCAGATCAAAAGattgaataaaaaatgtgtacTAACCGAGGTGTGAGGAACCTGCCTTTTCACTTTCta

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K09114 MXD, MAD; MAX dimerization protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133694 lncRNA downstream 57999 24986805 ~ 24991176 (-) True G106885
TU133665 lncRNA downstream 129978 24916164 ~ 24919197 (-) True G106862
TU133612 lncRNA downstream 467001 24581956 ~ 24582174 (-) True G106817
TU133521 lncRNA downstream 1214201 23829298 ~ 23834974 (-) True AMCG00011427
TU133519 lncRNA downstream 1231632 23813857 ~ 23817543 (-) True AMCG00011428
TU133876 lncRNA upstream 951139 26005979 ~ 26006456 (-) True G107035
TU133878 lncRNA upstream 954680 26009520 ~ 26012447 (-) True G107037
TU133879 lncRNA upstream 961144 26015984 ~ 26016680 (-) True G107038
TU133880 lncRNA upstream 962399 26017239 ~ 26018733 (-) False AMCG00011465
TU133901 lncRNA upstream 1039965 26094805 ~ 26127765 (-) True G107057
AMCG00011445 mRNA downstream 30861 25014819 ~ 25018314 (-) False AMCG00011445
AMCG00011446 mRNA downstream 45899 24992348 ~ 25003276 (-) True AMCG00011446
AMCG00011442 mRNA downstream 91529 24915216 ~ 24957646 (-) True AMCG00011442
AMCG00011436 mRNA downstream 844852 24202755 ~ 24204323 (-) True AMCG00011436
AMCG00011433 mRNA downstream 946250 24089272 ~ 24102925 (-) True AMCG00011433
AMCG00011447 mRNA upstream 555 25055395 ~ 25071697 (-) True AMCG00011447
AMCG00011454 mRNA upstream 60717 25115557 ~ 25116417 (-) True AMCG00011454
AMCG00011456 mRNA upstream 627075 25681915 ~ 25705668 (-) True AMCG00011456
AMCG00011457 mRNA upstream 674629 25729469 ~ 25730537 (-) True AMCG00011457
AMCG00011459 mRNA upstream 725122 25779962 ~ 25781092 (-) True AMCG00011459
TU133710 other downstream 30843 25012205 ~ 25018332 (-) True AMCG00011445
TU133362 other downstream 1988209 23053316 ~ 23060966 (-) True AMCG00011409
TU132729 other downstream 5181273 19865614 ~ 19867902 (-) True AMCG00011356
TU132572 other downstream 5636160 19410368 ~ 19413015 (-) False G105970
TU132457 other downstream 5943906 19102293 ~ 19105269 (-) True G105890
TU134083 other upstream 1452103 26506943 ~ 26516507 (-) True AMCG00011485
TU134703 other upstream 4570244 29625084 ~ 29625387 (-) True G107713

Expression Profile