RNA id: AMCG00011449


Basic Information

Item Value
RNA id AMCG00011449
length 2811
RNA type mRNA
GC content 0.45
exon number 5
gene id AMCG00011449
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 25106328 ~ 25114493 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATAAAACCACTAGCTGCTGAAATGCTCTCCTGTCACTGGGAAGTAGCTACTAGCCATCAGAGGAAGCTACACCCTAGAGAGTGTGTTAGGCTGATAGCCTAGCCACCGTGCTTGCCTGACCTACAGCAGTAACATGGAAAACCCAGCCAAGGAGGGGATTTTGTACATGCAGGGCGCTAAGTTTGGGATGAAGAGCTGGAGGAAGATGTGGGTGATACTGTTCGCTGCCAGCCCCTACGGGATCGGCCGAGTGGAGCTGTACGACGTGCGGGACGGGGGCAGTGGGGCGGTTGGCATGGCCGGGAAGCAGTATCTGAAGAAGGCTGACAAGAAGGTGATTCGCTTGGCTGACTGCATCAGCATCACCCCCGCCCCTGGCGAGAGCTGCCCCAAAGACAATGCGGCCTTCTACCTCAACACTACCCAGCGCACCTACGCCCTGGCCTCTGAGCACGCCCAGGCATGGATCGCCAAGCTCTGCCAGCTGGCATTCAAGAGAAATGATGAGAACCCGACCCCGATGAGCAGCCAGGATTGCGGAGAGGTGCCGATGGAAGAAAACGAGCTGTATTCGTCCTGGAAGGAAGAGAAAGAGTATGAAGTGACAGTGCAGAAGACCGAGGCATCCATGAGGTGCAGTCTAACGGGGAACTACACAATGGCACTCGACAAAGACAGCATCGTGCTGCTAGACCCCCAGAgcagacacacactgtactgctgGCCATACAGGCTGCTCAGACGCTTTGGCCAGGACAAGGATGTTGTGAGCTTTGAGGCTGGCCGGCGCTGTGAGTCCGGAGAGGGTCACTTCACCTTCCTGTCTAAAGACGTGCAGAGAATCTACAAGACCATTGAGGATGCCATCGGACAGCAGAGGAAGCAAATGAGCCGTGCCATTCCAGACCTGGACACAGTGTCCCTTCAGCCCTCTGCTCATAACTGCTCGGCACAGGACTTGGCCCCTGGCAGAAGTGCCCCTCCCACCTGGAGAGGGAGAACAAACGAGCCAACAGGAGAAGCCCCAGAGAGGGCACCGGTCCTTCTCCAAAAGCCAATCAGGAACCCCACGGAGCCAAACAGAAACATGAAACCCATCCCACAGGGGGGCAGCAATGTTGAAAGCACCCACGAATCTCCAGTCTACTCCACTGTGCAGGTGCCCTTTAAAAAAGATCTTGACCGAAGGGCAATTGAGAGACAGAAAAGCTTTCCCTCATTTGCCGCAATAGTGGAtgaaaaggaggaagaggaggaggaggagaagccGGAGGAGGGGGCAGATGAGGGTGAGGAGCCGGAGGAGGAGTCTGAGGGGGAGGggtcagaggaggaggagccagATGAAGAGGAGGAACGTTTTTTCTCTGTGCCCGAAAGCTTTAACATAGATAACTGGGCAGAGGAGACAAGCAGCTCTCCGCTTTATGACAACATTGTTAAGGTGAATAAGACTCGGGAGCAGCCCGAGGCGAAACATCGGGACGGTGCCCCGGGCTCGGAGTCGCATTATGCCCTGGCTAGCTTTAACCGGCGCCCCGAAGAGGAGGGGGTTGGTGAGGGGGAAACTGGCACGTTCTCGGGCCCCAGGTCTACCATTGTCACCAACACTGAAATACCCAATGATTTTAAGCAGAAACTTTCGGACTTGTTCGCCAAGGACAGGGTTAAAGTCTTACCAGCTCTGCCCACCCGCAACACTGGCATCACGGAGAGAATGTACAACAACTGAGATATTGTGTCCGCGGAGGATGTAATACTCTACTGGACAAGGTAGTCTTTGGTGTAAAAACTGTAGAGTCCAGATTTCTACTGTTGCTGTGTATATTAAGTTAgtaattaattttcttctttttcttcttttgttgcCTATGAGATTGAATATGATGTGCAACCTTGTGGAGTCattgttataatatttaaatattacaaatacaatgagAAGAATGTTACAGCTTCTTCAACACTATCAGACATCATACAGTTGTGCATCCCAAATTAATGCTCCATGGCTCGTTTatggttttttatttttcctgtgctAAGATTTTACCCATCACTTAATAAGCTGCATTGAATaaagcagacaaacaaataaatatttaaaaaacaaatttgatGCATGATATCCAACAGCCTTAACTGGATTTTCTTTCTAAGGCCTGAATAATGATTTAATAGATACTCAAAacaaattgttaaataaattatcaaGCCCATACATATTATGACCTGTGTtcaatcatgtatttttaaacacaataaataaaatggtacTAACTAAAAGCAAAGacacatacatgaataaatatacattcattaaatagataaagaaacaaaaaaatcacacaagtacacaatttatctttttataaaaactgcttttaaacaattttaactTTTCCATATTTATAAACGTGTATTTGGAATTAAAAGTAGAATACCCTGGTGTTGGTATAAATGTTCACTTGGTtgataaaaactgaaactgaatttaAACTGCTTGTTGTTAGCTTCGCTTTTCTGTGTTGttacttgatttaatttattggaaACGGtaagaaaattatgttttattaaagcaaatcaaattaattagcCACATAGTTAATCTTTAAACAGCTTAAACGTTTAGTTAGTTGGTGACACGTACACAGGTATCCATCTATATATTGTCTTTCAAATGTTTGGCACTATGGTTTCCCTTTATGCCTTATTCATTTTGcttatacttttattgtttcttaGAATTTAAACAAGCAGCtgaacacattaattaattaactaataaataagtaaataagacTGGAG

Function

GO: NA

KEGG:

id description
K24036 DOK3; docking protein 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133720 lncRNA upstream 57181 25047524 ~ 25049147 (+) True G106906
TU133680 lncRNA upstream 115091 24986838 ~ 24991237 (+) True G106874
TU133681 lncRNA upstream 115154 24986838 ~ 24991174 (+) False G106874
TU133666 lncRNA upstream 162650 24919851 ~ 24943678 (+) True G106863
TU133765 lncRNA downstream 223059 25337552 ~ 25337767 (+) True G106946
TU133766 lncRNA downstream 256986 25371479 ~ 25371745 (+) True G106947
TU133779 lncRNA downstream 497126 25611619 ~ 25611879 (+) False AMCG00011455
TU133783 lncRNA downstream 551631 25666124 ~ 25667782 (+) True G106961
TU133788 lncRNA downstream 559923 25674416 ~ 25677419 (+) True G106966
AMCG00011451 mRNA upstream 1223 25094529 ~ 25105105 (+) True AMCG00011451
AMCG00011450 mRNA upstream 12840 25071737 ~ 25093488 (+) True AMCG00011450
AMCG00011444 mRNA upstream 59114 25044205 ~ 25047214 (+) True AMCG00011444
AMCG00011443 mRNA upstream 91459 25003664 ~ 25014869 (+) True AMCG00011443
AMCG00011440 mRNA upstream 119605 24971547 ~ 24986723 (+) True AMCG00011440
AMCG00011453 mRNA downstream 55007 25169500 ~ 25170670 (+) True AMCG00011453
AMCG00011452 mRNA downstream 56215 25170708 ~ 25171196 (+) True AMCG00011452
AMCG00011455 mRNA downstream 493493 25607986 ~ 25662179 (+) True AMCG00011455
AMCG00011458 mRNA downstream 647343 25761836 ~ 25766078 (+) True AMCG00011458
AMCG00011461 mRNA downstream 688419 25802912 ~ 25811978 (+) True AMCG00011461
TU133489 other upstream 1353326 23748674 ~ 23753002 (+) True G106711
TU133383 other upstream 1749769 23356062 ~ 23356559 (+) True G106618
TU133378 other upstream 1764563 23341308 ~ 23341765 (+) True G106613
TU132939 other upstream 4739105 20361208 ~ 20367223 (+) True G106242
TU132823 other upstream 4767241 20296011 ~ 20339087 (+) False AMCG00011365
TU133992 other downstream 1241674 26356167 ~ 26360775 (+) True AMCG00011476
TU134100 other downstream 1655945 26770438 ~ 26771214 (+) True G107202
TU134126 other downstream 1703559 26818052 ~ 26830055 (+) False AMCG00011488
TU134311 other downstream 2597713 27712206 ~ 27727867 (+) True G107394
TU134734 other downstream 4583108 29697601 ~ 29699419 (+) True G107741

Expression Profile