RNA id: AMCG00011461



Basic Information


Item Value
RNA id AMCG00011461
length 672
RNA type mRNA
GC content 0.54
exon number 5
gene id AMCG00011461
representative True

Chromosome Information


Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 25802912 ~ 25811978 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GAAATGGCCGACAACAAGAAGAGGATGAGCCTGAAGGAAGACCTGACTTGCCCAATCTGTTATGATCTCTTCACTGAGCCAGTGATGCTGAGCTGCATGCATCACTTCTGCAAGGCCTGCATCATGACCTTCTGGAGAGGGACCAGGGGCCCCGTGTCCTGCCCCCACTGTCGACAGGAGTTCCCCAGCAAACAGTTCCAGACCAACTACCTGGTGGCAGGCATGAAACAAATGAAGGATTCCCTGGAGTCTTACCTTGCCAAAAAGGACGATTTCCTAAAAATGATGCAGCGAGATGCAGAGAAGATCGACATTGCAAAGAAAACCAGGGCTGAACTGCAGGGCCGAGTGCAGGCGGAGTTTCAGGCCTTGAACCAGATCCTGCTGAACGAGGAGGCGGCCATGCTGGGGCAACTGCAACACGAGGAGGAGCAGAAAGTGAACGAGCTGCAAGGACACCTGGAGCAGCTGACCGGGGCCGTCAGGGAGTTGGAGGAGAGCATTCAGGTCCTGAAAGACCGCCTGGACTCCATGGAGCAAAGTGTATTAGTGGAGgtTCCAGAAGTTAACCTCAGGAAACTGGAAGAGTGCCCACATGCTCCAGCAAGAGTCTCGTTCAGCATGGATGAGACGATGGGAGATGTTCCCCTTCTCCAGAGGGCTGTCCCTTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU133824 lncRNA upstream 7300 25795413 ~ 25795612 (+) True G106994
TU133796 lncRNA upstream 82326 25698252 ~ 25720586 (+) True G106973
TU133788 lncRNA upstream 125493 25674416 ~ 25677419 (+) True G106966
TU133783 lncRNA upstream 135130 25666124 ~ 25667782 (+) True G106961
TU133779 lncRNA upstream 191033 25611619 ~ 25611879 (+) False AMCG00011455
TU133839 lncRNA downstream 70714 25882692 ~ 25888838 (+) True G107004
TU133936 lncRNA downstream 387972 26199950 ~ 26202619 (+) True G107084
TU133952 lncRNA downstream 465396 26277374 ~ 26292447 (+) True G107098
TU134002 lncRNA downstream 575770 26387748 ~ 26387984 (+) True G107126
TU134004 lncRNA downstream 635224 26447202 ~ 26451575 (+) True G107128
AMCG00011458 mRNA upstream 36834 25761836 ~ 25766078 (+) True AMCG00011458
AMCG00011455 mRNA upstream 140733 25607986 ~ 25662179 (+) True AMCG00011455
AMCG00011452 mRNA upstream 631716 25170708 ~ 25171196 (+) True AMCG00011452
AMCG00011453 mRNA upstream 632242 25169500 ~ 25170670 (+) True AMCG00011453
AMCG00011449 mRNA upstream 688419 25106328 ~ 25114493 (+) True AMCG00011449
AMCG00011460 mRNA downstream 37595 25849573 ~ 25877546 (+) True AMCG00011460
AMCG00011462 mRNA downstream 101546 25913524 ~ 25916673 (+) True AMCG00011462
AMCG00011464 mRNA downstream 193916 26005894 ~ 26011894 (+) True AMCG00011464
AMCG00011466 mRNA downstream 222254 26034232 ~ 26035368 (+) True AMCG00011466
AMCG00011468 mRNA downstream 269973 26081951 ~ 26112854 (+) True AMCG00011468
TU133489 other upstream 2049910 23748674 ~ 23753002 (+) True G106711
TU133383 other upstream 2446353 23356062 ~ 23356559 (+) True G106618
TU133378 other upstream 2461147 23341308 ~ 23341765 (+) True G106613
TU132939 other upstream 5435689 20361208 ~ 20367223 (+) True G106242
TU132823 other upstream 5463825 20296011 ~ 20339087 (+) False AMCG00011365
TU133992 other downstream 544189 26356167 ~ 26360775 (+) True AMCG00011476
TU134100 other downstream 958460 26770438 ~ 26771214 (+) True G107202
TU134126 other downstream 1006074 26818052 ~ 26830055 (+) False AMCG00011488
TU134311 other downstream 1900228 27712206 ~ 27727867 (+) True G107394
TU134734 other downstream 3885623 29697601 ~ 29699419 (+) True G107741

Expression Profile