RNA id: AMCG00011463


Basic Information

Item Value
RNA id AMCG00011463
length 3589
RNA type mRNA
GC content 0.41
exon number 10
gene id AMCG00011463
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 25877496 ~ 25898827 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCTTTTGCTAGATTTGATGTCTACAGGAAAGTACCCAAAGACCTGACCCAGCCAACTTACACAGGAGCCTTCATTTCAATCTGCTGCTGTGTCTTCATGCTCTTCCTGTTCCTGTCTGAGCTCACAGGATTCATTGccacagaaatAGTAAATGAACTGTATGTGGATGACCCAGATAAGGACAGTGGGGGGAAGATAGATGTGAGTTTAAACATCAGTTTGCCAAACTTGAACTGTGATCTCGTTGGGTTAGATATTCAAGATGAGATGGGGAGACATGAAGTTGGCCACATTGACAACTCCATGAAAGTCCCCCTGAACAATGGCTACGGCTGCCGATTTGAAGGGAAATTCAGCATAAACAAAGTACCTGGCAACTTTCATGTATCCACACACAGTGCCACAGCCCAGCCCCAGAATCCGGACATGACCCATGTCATCCACAAACTGGCCTTCGGGGAAAAGCTACAGGTTGAGAACGTTCAGGGGGCCTTCAACGCATTAGGCGGAGCTGACCGACTGGAATCTAACCCACTGGCTTCCCACGACTACATACTGAAGATTGTGCCCACTGTGTATGAGGATATGACTGGAAAACAGAGATTCTCTTACCAGTACACCGTAGCCAACAAGGAGTACGTGGCTTACAGTCACACCGGACGCATTATCCCAGCTATCTGGTTCCGCTACGACCTGAGCCCCATCACGGTGAAATACACGGAGAGACGACAGCCCTTCTACCGCTTCATCACCACGATCTGTGCCATCATCGGAGGGACGTTCACAGTAGCTGGCATCATTGACTCCTGCATATTCACGGCCTCCGAGGCCTGGAAAAAGATCCAGCTGGGGAAGATGTCCTGAGACTGCATTGCTGTGAGTGCCCCTGCAGGAGGCGCCCACTAGCTCAACACAAAGAGATTTGCCCTTATTAATTTATACCATTGGGACCTAGCAGGCCAATCTCCCATTATGCGCATTTCTATTCCCTTGCAAAAAAAGACcgaacgagaaaaaaaaaaaagtctatacatgtttttatttttttaaagtcattgtATCTCGTCCTCAGTGCGTTTCATTGTCAGTCTCtcagaggttaaaaaaacaacgaaTGCCAACACACTGCAGCCTTCAATCAGTCTACCTACTGCGTTACTGATGTTTGTCCCTCTCATTGGTATTGCATGACTATAGATGTAAATGTGACGCTAAAGATAACTGGGCACATTTTAGTTAACGTAGTGGGACAATTTTCCTCAGAGTTCTCTAGCTTGTCTCAATAGTGGTAGAATCCAGGGCATCAAATATATAAAGACTTGACTTCACACTACATTGCTGGCTACCATAAGAGTTCTCCATTAGTGTGTGTTGCCTGGTTCCATCACCCCAGAACTCTGAGATCGATCGTGGCGAAGGCAAAGGGCTACTGCATAACCAAACGGGTAGGACAAGCTGTAGTGAAGTGAGCTGATGGAAGCAACACTGAGACCCACCCCCCCCAATCATTTTGTCACTGTATTAAATGTAGGAATTTAAAGCCAAATGGCTCCATTGCATGACAATTTATAAAATGGTGCTGAGGAATCCATTTtagcgttttcttttttttcttttacagaatCATACCATTTTATACACAGCGATCGCATCCATACATCTACTTTCCTCCCGTAGTAATCTATACACTACAGTGTTGATTTATGGCAAATTGTTTCGAGGGTGATGGCTTAATTATGTAAATTCATTCTCAAGGCGTTCCGGACATGATcttttgatttgatattttggttttgattgGTACCAACAGCAAGACACTGCTGCCATTCACTGATAAAAACCgggatgtgtttgtgtgccttcATGCGAGCACTGTGATTACAATTGAATTGAACTGGAACATCGGAGTCAAATTATTGGGATTTATATATATCTCCACTCCAGCAAGCCATCTATGTCACCCAAACTTTGTATATATGTTGCCAATCTAAGTAAGAACAGAACTGtgctatatataaaaatgttaattacaataCGGTTTTGCAGTGGGTGTAAATGGTACAAATCTACAATGAGAGTTATTTGTGATTTACCGGTTGATCTTGCCCATGTATTGAAAGTATTTTGGTTCCCAATTTAAAGTGGACACCAATCTGTTCAATATGCCTTAATAGAATAGATTTTTGCTTTTGGTGGTCAATGGGAAAACCTGCACGCCTTTTTCCCTGCATACTTAGGACATACTGACAAAATGAAGGTTTCTGGAGGAGTccattgcatttcttttataGTTGAGTGAGGGAAAGCCCGGTTATCATTTCCGAAGCATACAACTATATGATCCTTCGATTTTCATTCAGCGATACGAACCAAAACAGTTATCTGGTGCCAAACCTTGGAATAGCAAGTATGTGCCATTGTCCTGACCAGTGCAGGCCAGACAACCCTGTTAATCCGTACTGTAAAGAGATCCTCCTGCCCATTTTGAATATCCCGATTACTGCGTTTACGTTTCTGATGgcggagattttttttttctgatcacACTACATCCACAAAActtaatgcttttgtttttttcttgtgttttgagCTGCTAGCCCTGTTCAGAATCTGTCCATGTGGTTTTGGAGTTTGTGGTGATTCCATTTCTGCCCAGGCCTACCAAGCATTTCATTTGCAGGCTTTGAGCACTATCGCATCCAAGAAGGCGCTAATGAAAAACCACCTTTTAATGGAAATTCATGAGACATTCCGACGTCATTTGTAAATATTCTTTTAATTGGGtaacaagtgtttttttccacacGTATATAATTGTTGCAACGTGACAGATTTTCCGGCTGTAATTGAAGGTGTGGGATATGGGGATGGGCAGCATCCAGCATCCTGTGcaaagaaatgtgcaaaattTCACTGCCAAAAAACTACTTTTTATCATAGTTGAATGTTCCAGAATCTTTAATCCTAAACTCCAGACGCTACAGCAACCCATGGAAACTCATGCCCTGTTATTGTCAATCAAACTAATTATTGCATTCTCATCTTGGattatattgattgtttttcctaaATCCCATTTGttgaatggttttattttttaagaacacTGTTAATGATTTCTCTGTAATGAATTTGTTTGGTCTCATCCTCAGTGTTATGTCTCCTTATGAAGTTTTGTTACAAATGTTGAATAggatttttgttacattttttgggAGGAATAAGAAAAGTTTTCAACTGGACAATTTGTGGTCTTTTATTGAAATTcacatcagttttttttttttttctcatcaaaCTGTAGACAGGAGTTGGTTCATGTGAATCCCATTGAAACTGGGTCTGGTTCGATATGAACGGTTGCATAAAGACACACATAGCAAACATATTTGTTACCTGTACTCCATGGCAAGAGAGTCATCCCAgcattttccttctttctgaTTATAGATGCATACAAGTGCAGTGTTTTAcaatcatttataaaatgtaagtacaaaaaaaaacactgatataTTAAGAAACAGATATATATcgcttttattcttttttcttttttttttttttttttttaagttttgta

Function

GO:

id name namespace
GO:0016192 vesicle-mediated transport biological_process
GO:0033116 endoplasmic reticulum-Golgi intermediate compartment membrane cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K20365 ERGIC1; endoplasmic reticulum-Golgi intermediate compartment protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133694 lncRNA downstream 886320 24986805 ~ 24991176 (-) True G106885
TU133665 lncRNA downstream 958299 24916164 ~ 24919197 (-) True G106862
TU133612 lncRNA downstream 1295322 24581956 ~ 24582174 (-) True G106817
TU133521 lncRNA downstream 2042522 23829298 ~ 23834974 (-) True AMCG00011427
TU133519 lncRNA downstream 2059953 23813857 ~ 23817543 (-) True AMCG00011428
TU133876 lncRNA upstream 107152 26005979 ~ 26006456 (-) True G107035
TU133878 lncRNA upstream 110693 26009520 ~ 26012447 (-) True G107037
TU133879 lncRNA upstream 117157 26015984 ~ 26016680 (-) True G107038
TU133880 lncRNA upstream 118412 26017239 ~ 26018733 (-) False AMCG00011465
TU133901 lncRNA upstream 195978 26094805 ~ 26127765 (-) True G107057
AMCG00011459 mRNA downstream 96404 25779962 ~ 25781092 (-) True AMCG00011459
AMCG00011457 mRNA downstream 146959 25729469 ~ 25730537 (-) True AMCG00011457
AMCG00011456 mRNA downstream 171828 25681915 ~ 25705668 (-) True AMCG00011456
AMCG00011454 mRNA downstream 761079 25115557 ~ 25116417 (-) True AMCG00011454
AMCG00011447 mRNA downstream 805799 25055395 ~ 25071697 (-) True AMCG00011447
AMCG00011465 mRNA upstream 118349 26017176 ~ 26019400 (-) True AMCG00011465
AMCG00011470 mRNA upstream 215042 26113869 ~ 26120015 (-) True AMCG00011470
AMCG00011469 mRNA upstream 240139 26138966 ~ 26162878 (-) True AMCG00011469
AMCG00011474 mRNA upstream 292299 26191126 ~ 26195850 (-) True AMCG00011474
AMCG00011475 mRNA upstream 421194 26320021 ~ 26334761 (-) True AMCG00011475
TU133710 other downstream 859164 25012205 ~ 25018332 (-) True AMCG00011445
TU133362 other downstream 2816530 23053316 ~ 23060966 (-) True AMCG00011409
TU132729 other downstream 6009594 19865614 ~ 19867902 (-) True AMCG00011356
TU132572 other downstream 6464481 19410368 ~ 19413015 (-) False G105970
TU132457 other downstream 6772227 19102293 ~ 19105269 (-) True G105890
TU134083 other upstream 608116 26506943 ~ 26516507 (-) True AMCG00011485
TU134703 other upstream 3726257 29625084 ~ 29625387 (-) True G107713

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00014236 True 3418 mRNA 0.37 10 NC_007125.7 15768942 ~ 15814987 (+)