RNA id: AMCG00011467


Basic Information

Item Value
RNA id AMCG00011467
length 1677
RNA type mRNA
GC content 0.54
exon number 6
gene id AMCG00011467
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 26127315 ~ 26135778 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCAGGCCAGCACACTCTCACACGCTCACTCTCACATTCCACCAGGACACTGCTCCGGGGCAGGGGAGAGAAGGATGGCGGACCAGGAGACCACGCCCATGGGGGACGCCCCTCCCACCTACATGCTTTTCCTCCTGgtcctcttcttcttcctcacGGGCCTCCTGGGGTTCCTTATCTGCCATGTCCTGAAGAAGAAGGGTTACCGCTGCCGGACCGGAGAGCCAGACGAGGAGTGTGAGGACAAGCTGGCGGGGGGAAATCAAGAGGAGGAAACTGAAGATACCAACCAGGACACAGTGGAGCAGATACTGAAGTGCATCATTGAGAACGAAGCAAATGTGGAAGCCTTGAAGGAGATGTTGGGAAACCAGAATGTGCCAGATCAAATGGACCACAGCGACCGCACCGGCAACGCCTGTCACCTCTGTGTCCAAGGCCGCACCAAGAAGGCCCGTGGCCGGAGCAGAGTGGCCAGGAGCAAGGCCCGGCCTGGGGAGCACATTGTGTTTTCCGTGGGGAGGTTCAAAGTCACCCACATCGGGAAGAAAAACAGCATCTCAGAGACCGCCAACCCCTCTGCCACCGAGCAAGAGCAAACCGGTGACCAATCGCAGGGCACCGAAACCCACACCCACCACACGCATGAGGAAAACGACCAATCACAGGGCAATGTGCGGGAGGAGTTCAACCTGAGGAACATGTTCAAAGACGTCAGCCCGGAGACGGCCAATGGGGCAGTCCAGATGCCAACTGGACCTGTTCCCACAGAGAACAAAGCCTGCCCGGAGACGGAGGGAGCAGATTTGCCCCCGCCTGAAGGGGAGAGGAACCCCAGTGCTGTGGAGGACGTGGGGGTGGATGGTGTCACCAAGACAGAGGCCATTCCTAACAGCGCAGGCACCAGTGAGGAGGTGCACCACAGCCCAGTCCGCATAGAGGAGGTCGTCATCGTGAGCTCGACTCCGGACAGGCGGGGCAATTACGTTGCGCTCCAGATGGAGGACGAGGTGGGACAAATGGAAGACGGCAAAGACGATATGATGGAAATGGAGGACATCAAGGACTGCAGGGTGAGccaagaggaggagggggaggaggtgtCGCGCGGCTCCAGAGAGTCAGGCCAGGGGAGCCACTCAGGGGAGAGCAAGAGGAGGTCCATCGTGGTGCACACTCAACACAAATGATCTGTCCATATCATCCTCAAGCCTACCATCTCAAGGTTACACTGAGCTTGTACTGTATCACCTGCCTGCCTCATTCTCTGTTGCCACTCTACCATATTGACCAGTAATGGAAGATGTAGTGCAGCTGAATCTGCAGAGGTACATGGTTCCTAACCGGGAAGAGATTCACAATACTGTCTGCTCCTTGTTCTGCTTAACAGCATCCAGATGTTTAAGGAGAGTACGTCTCCAGGCTTCCAGACAGTGTAATTGAATCAGATTGGTTGCTGCCCTGTGCCAGAGTTTAGGCCTCCATTGAaaatttagatattttaaaagctcTGTAGATTAAAAAAGCTGTTCTCTCCTGCCTGCATTGTGCCCTTCACTTTAGTAAAAGCAGTGCAGCCCACTCTCAGTTCCCACTAAGCCTTCTTTGTGTCCTCCGGATtgatcagaataaaataaatattgcttagTTAGCATTAATAAACACCAAAGCGTTTT

Function

GO:

id name namespace
GO:0065007 biological regulation biological_process
GO:0050789 regulation of biological process biological_process
GO:0050794 regulation of cellular process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133839 lncRNA upstream 238477 25882692 ~ 25888838 (+) True G107004
TU133824 lncRNA upstream 331703 25795413 ~ 25795612 (+) True G106994
TU133796 lncRNA upstream 406729 25698252 ~ 25720586 (+) True G106973
TU133788 lncRNA upstream 449896 25674416 ~ 25677419 (+) True G106966
TU133783 lncRNA upstream 459533 25666124 ~ 25667782 (+) True G106961
TU133936 lncRNA downstream 64172 26199950 ~ 26202619 (+) True G107084
TU133952 lncRNA downstream 141596 26277374 ~ 26292447 (+) True G107098
TU134002 lncRNA downstream 251970 26387748 ~ 26387984 (+) True G107126
TU134004 lncRNA downstream 311424 26447202 ~ 26451575 (+) True G107128
TU134125 lncRNA downstream 703663 26839441 ~ 26842778 (+) False AMCG00011488
AMCG00011468 mRNA upstream 14461 26081951 ~ 26112854 (+) True AMCG00011468
AMCG00011466 mRNA upstream 91947 26034232 ~ 26035368 (+) True AMCG00011466
AMCG00011464 mRNA upstream 115421 26005894 ~ 26011894 (+) True AMCG00011464
AMCG00011462 mRNA upstream 210642 25913524 ~ 25916673 (+) True AMCG00011462
AMCG00011460 mRNA upstream 249769 25849573 ~ 25877546 (+) True AMCG00011460
AMCG00011473 mRNA downstream 53354 26189132 ~ 26199349 (+) True AMCG00011473
AMCG00011471 mRNA downstream 104595 26240373 ~ 26242027 (+) True AMCG00011471
AMCG00011472 mRNA downstream 110149 26245927 ~ 26264527 (+) True AMCG00011472
AMCG00011476 mRNA downstream 223087 26358865 ~ 26360640 (+) False AMCG00011476
AMCG00011483 mRNA downstream 252516 26388294 ~ 26397982 (+) True AMCG00011483
TU133489 other upstream 2374313 23748674 ~ 23753002 (+) True G106711
TU133383 other upstream 2770756 23356062 ~ 23356559 (+) True G106618
TU133378 other upstream 2785550 23341308 ~ 23341765 (+) True G106613
TU132939 other upstream 5760092 20361208 ~ 20367223 (+) True G106242
TU132823 other upstream 5788228 20296011 ~ 20339087 (+) False AMCG00011365
TU133992 other downstream 220389 26356167 ~ 26360775 (+) True AMCG00011476
TU134100 other downstream 634660 26770438 ~ 26771214 (+) True G107202
TU134126 other downstream 682274 26818052 ~ 26830055 (+) False AMCG00011488
TU134311 other downstream 1576428 27712206 ~ 27727867 (+) True G107394
TU134734 other downstream 3561823 29697601 ~ 29699419 (+) True G107741

Expression Profile