RNA id: AMCG00011468


Basic Information

Item Value
RNA id AMCG00011468
length 3275
RNA type mRNA
GC content 0.56
exon number 16
gene id AMCG00011468
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 26081951 ~ 26112854 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGACATCTGCAGCCTTGGCCGAGAGGAGCCCCCAGCAGATGACATCAAGTCATCCCAAGGAGAGGGACTGGTCTGTACCGTGTGCTGCAGGGAAGACTACAGGAAAAACCCTGGCTGTTGGAAGTTGTCAGAATACCAGGcgactctctctctgtctcgtcGGTTCTTGGAATATTTTCGTAGCAACTGCAAAGTGACACACCGATCTACATCTACTGTTGATGTCGACACCCCTCAGAACTGCCTGTAATATGACACAGGTCCAGAAGAAGACAACCACAATGTCACTGACCATTTCGTCCTGCTCACGGGAGTCGTCCTCGAGCACCACCTTCCAGCAGAGACACTCCAGCCTGGTCCAGCCGCTGTGCATCAGCCCTCAGCGGACCCAGAGTCCATCCTACAGCCAGCAATTTGCAGGGAACGGAGGAGTGGCCCCCACATTTATAAAGTGCCTCCATGACATCAGCACAGTGAAGGGCCAGCTGGTGGTCCTGGAATGCCGTATCCGAGGGACGCCCCCTCTGCACGTGATGTGGTACCGAGAGGAAGAGCTGATAGTGGACTCAGCGGACTTCCGCATCCTCAGGAAGAAAGCCAGTTCCGTTTCAGTTCCTGGTCTGGACGAGGTGCTGGCTCTGGAGGAGACTTCCTGCTTCCCAGCCGCTCCCGGCCCAGAAGACTTCCCGGCCTTCATGTGCGACACTGCTGAGATCCCGCCCCCAGAGTGGCCCGAGAGCCCAGAGGACGAGGACGGCCCCGTGTTTGAGTCCCCCATGGAAAGgacTCCAGAAGTACAGCAGCACAGGGATATTTTCCCAGGAGAACGGCAGCACCCTGTCCCGGTAGAGAGCAGCCGCAGGGCTTGGTCTAGGGACTCTTCTGAAGCCTCGGCTGTGTTGCCACTGGTCGAGGAGAAACAATTATCGTCCAAACTAACAGCCAGGCGTAGCGAGCCCAGCGGCCAGCCAGACCCCACCGGCACTATGAGCATCACCAACCTCCCTTCCTTCTCCCCCACAGCCTACCCCCCCAGCGCCTTCAACTACGAGCGGCCGCGACACTTCATCCAGTCTCAGCCCCGCTTCCAGGCCCCGAGCTATGAGCAAGCCTGCCAAGGCCAGTCTGTCTACCCCAATGGCCAGAAGCCCTCCCCATCCTCCTCCACGCTCAGCTCTCCGGTTTccactccctcctcctcccttgggtCCCCCAGAGATCCCCCTGCCCCTCGGCCCACCTCCCCATCTCGCACCCCCATGCGGTCCAGCGTCACCCTGGTGCCCAAAGTCCCCGCTGGCCAACCTCGATCTCCGGCTGCCTTCCTCAGTTCGGTCCTGCCCTGCCAGCCAGTCTCCCAGGCCAAGCCAGCCTCCGTGGCCCCACCTAGGCCTGCCTCTCCCGTTTACTCTCCACGCACCCCAACTCCCCCCAGCATCTCCCCCATGGTGCCAAAGACCACCCCTGTTCCTCAACATCCTGCACCCCCTGCCCCTCCCAAGCTTCCTCCTAGTTACAGACAGTCTCCAGCCTCAGAAAAGCCCATCTTCAAGAAGTCCCCTCGGCAGACAATCCACTCCACTGATGAAGAGATCCAGGGCTCCAAGGACGCCCTCATCCAGGACCTGGAAAATAAACTTCGCTGCAAGGAGGCTCGGAGGAGGAATGGAAGCCAGAAGCTGACCTATGAGGAGAGGATGGCTCGCAGGTTGCTGGGCCCAGATAACGTAGCCTCTGTGTTCGATATTGAGAACTCCCAGGACTCGCACTCGGGGCAGaacTCCCCAGATGGCAAGCACACCGGCACTGGACAGCTGAGAAACAGACAGGACTCCGGGACGCAGGACAGTGAGACGGCTGCCATCCAGGAGAAGTGCTACGCCCCTCGCTTCATTCAGGTGCCCCAGGACCTCACTGTGGAGGAGGGACGCTTCTGCCGGATCGACTTTAAGgtTGGGGGCCTACCTACTCCTGACGTGGTCTGGTATCTGAACGGGAAGCCCATCCGCCCAGATGACTACCACAAGATGCTCGTGTGTGAGAAGGGCGTGCACTCCTTCATCATAGAGATCGTGACGGTGCATCACGCCGGGGTGTATGAGTGCGTGGCCAGGAACCGCGCAGGGGAGAGTCGCTTCTCCCTTCGTCTGGATGTCATTGCCCAGGAGCTGCTGCGCCCCCCGGTGTTCCTCCAGAAGATGCAGAACTCGCGGGCTCTGGAGGGGGACACCGTGAGGCTGGAGTGCAGGGTCTCGGCCTCTCCGCTCCCACAGCTTTACTGGAAGAAAGACAAGGACATGTTGTGCATGGAGCCAGACAGGATGAGCCTGTATGAGGACAACAGTGGGCGGATCTGCCTGCTGATCGAGAGGGTGCAGAAGGCCGACGCGGGTTGGTACACTGTATCCGCCATCAACGAAGCTGGCATGTCCACCTGCAACGCCAGACTGGATGTGGGGACCCGCTTGAACAAGGCTGTCCCTGCAGGCAAGCACCTAAAAGTGCGCCCCACGTTCAGCCAGTACTCGGTCCTGAACGGGCAAGGAGCCGATGAGAGGCAGTCCCGGAGTCCAGAGGGCACCATGCAGAACGCGCCCCTGTACGAGAGTGACGAGCTATAGAGACCGGGAGAAAAGCCCACCGGAATTGCAGCAGCAATGACGTGCCTTATTTTTGTACCCATCtctgatttttttgttcttcagatTTAGGTTGTTTTTGTGGTGGGGGTGGAATTGCAAGTTTGGTCATGCAGACCAGTCCTACTTCATCTGTTTTGCCCCAGTCAGTTCATTGCACTTCCAAATTCAAGGGACTCCCCTCTAGTTGagtattttgaataattgttGAAACTCTTCTCACTTTAGAatggcaattttaaaatgcaccttAGCTAATGACTGCCTGAGCTCTCCTCCCCGTGTAGTAGTTTGACATGGGTCTTTGTTGTACACTGTCCAGTTCTGAAAGGTCCGGTATGTTTGAGAGGGAAATGTTTTTACCACACAAGTTTCCAGTGCCAAGGGTACTGCATATCCCAAGAGATCTTTATcaaagtttaattaaacaattctaATATTTATTAGCTATTTAATGGGATACTGGTACTGAAACATCCGGTAACATCTCTTGCAAGGCTGCCTTCTACAGGTTTGGACTTTCTGAAGAAAGACTTTTCTACCAATGTGAAGCAGAAAAAGGAAACCAACACTTGACCTGTCTCTGTGTATGATTTAGAtgttaaatggaaaaatgaataaagtttTCTTGacaa

Function

GO: NA

KEGG:

id description
K19875 MYOT; myotilin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133839 lncRNA upstream 193113 25882692 ~ 25888838 (+) True G107004
TU133824 lncRNA upstream 286339 25795413 ~ 25795612 (+) True G106994
TU133796 lncRNA upstream 361365 25698252 ~ 25720586 (+) True G106973
TU133788 lncRNA upstream 404532 25674416 ~ 25677419 (+) True G106966
TU133783 lncRNA upstream 414169 25666124 ~ 25667782 (+) True G106961
TU133936 lncRNA downstream 87096 26199950 ~ 26202619 (+) True G107084
TU133952 lncRNA downstream 164520 26277374 ~ 26292447 (+) True G107098
TU134002 lncRNA downstream 274894 26387748 ~ 26387984 (+) True G107126
TU134004 lncRNA downstream 334348 26447202 ~ 26451575 (+) True G107128
TU134125 lncRNA downstream 726587 26839441 ~ 26842778 (+) False AMCG00011488
AMCG00011466 mRNA upstream 46583 26034232 ~ 26035368 (+) True AMCG00011466
AMCG00011464 mRNA upstream 70057 26005894 ~ 26011894 (+) True AMCG00011464
AMCG00011462 mRNA upstream 165278 25913524 ~ 25916673 (+) True AMCG00011462
AMCG00011460 mRNA upstream 204405 25849573 ~ 25877546 (+) True AMCG00011460
AMCG00011461 mRNA upstream 269973 25802912 ~ 25811978 (+) True AMCG00011461
AMCG00011467 mRNA downstream 14461 26127315 ~ 26135778 (+) True AMCG00011467
AMCG00011473 mRNA downstream 76278 26189132 ~ 26199349 (+) True AMCG00011473
AMCG00011471 mRNA downstream 127519 26240373 ~ 26242027 (+) True AMCG00011471
AMCG00011472 mRNA downstream 133073 26245927 ~ 26264527 (+) True AMCG00011472
AMCG00011476 mRNA downstream 246011 26358865 ~ 26360640 (+) False AMCG00011476
TU133489 other upstream 2328949 23748674 ~ 23753002 (+) True G106711
TU133383 other upstream 2725392 23356062 ~ 23356559 (+) True G106618
TU133378 other upstream 2740186 23341308 ~ 23341765 (+) True G106613
TU132939 other upstream 5714728 20361208 ~ 20367223 (+) True G106242
TU132823 other upstream 5742864 20296011 ~ 20339087 (+) False AMCG00011365
TU133992 other downstream 243313 26356167 ~ 26360775 (+) True AMCG00011476
TU134100 other downstream 657584 26770438 ~ 26771214 (+) True G107202
TU134126 other downstream 705198 26818052 ~ 26830055 (+) False AMCG00011488
TU134311 other downstream 1599352 27712206 ~ 27727867 (+) True G107394
TU134734 other downstream 3584747 29697601 ~ 29699419 (+) True G107741

Expression Profile