RNA id: AMCG00011469


Basic Information

Item Value
RNA id AMCG00011469
length 3412
RNA type mRNA
GC content 0.53
exon number 20
gene id AMCG00011469
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 26138966 ~ 26162878 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCACACTATAGGAGGTGGGATGGGTGAGAGCAAGACTCGGCAGGGGAAGTATTACTCAAAACGcacaggagaaaaaagaaaaaagaaaagaaagtgggCAGAAAAAGAGAATCCGGACTGAattcaaacaagaaaacaaaaggagcGGAAAATGCAGCCTCCTCCTCGCAAGGTGAAGGAGACTCAGGAGGCGAAGGTGGCTTTTGCAGAACAAGTGGCCAGACTTCAGAGCAAACACCAGCAGGAAAGCGAGCTCCTGGAAGAGATCAGGTCCTTCAGCAAGCAGAGGGCTGCCATCGAGAAGGAGTACGGTCAGGCTCTGCACCGACTGGCCACACAGTACCTGAAGAAGGACTGgcacagagggaggggggaCAGCGCTGATGCCAGTAGGAGTGTGTTTGCGGTGTGGAGGTCTGTGATCGAAGCCACCGAGCAAAGCGGCCTGTCTCGGCTCAGCGCGGCTGAGGGCTATCGCTCCCTGACAGCCGAGGCCCTGAAAAGTCTGCGTGTTGCTAAGGAGCAGCGCACCAAAAAGGGTTTGGAGCAGCTGCAGCGCGTGCAGGGGGAGCTGGTGGATGCGCTGAGGGAACTTAACAAGGTGAAGAAGAGGTACTGCCAGCTGGAGCACATCGCTGATGTCGCCAGGGAGAAGGCCGCTGATGCCCAGGCAAAaTCTAAAAAGAACGACCACGGACTTTTCCACTTTCGGACAAGCCTGCAAAAGCTGTGTGTGAAGCTCAACGCCCGCCTGACCGAGTGTGACCAGCAGCTCACAGAGTCGCGTAACGAGTACCTGCTGACGCTGGCGGCAATCAACTCTCACCACGGGCACTACCACGCCACCGACCTGCCCGCCCTAATGAAGGTCATAGATGGCGACCTGTACGACCAACTGCGTCAACAGTTCACTGTGCTGTGCAGGACTGAGATTGACACCTGCCAATCAACACAGACTGCCTTCTGCAGGATCAGAGAGGACTCCACCCAGGTGTCCAGGGAGCACGACCTCAAGCTCTTTCTCCAGGACAACCCAGCCTTCACCAAGGGCTCTGTGTTTCACTTCCAGGCGGCTCCCAATGATAAGGTGAGCAGTCTGGTGCATCGGAGCAGCTCCCAGGAAGGAGTCAGCTGCCTGGATAAGGAGGCACGGAAATGGGCCACCAAAGCAGCAAAAGACTACAAAATCATCACCCACGGGGAGAGAGTGCTACAGACCCTGGAGAGGCGGCGGAAATTGGTGCCGGAGGACGAGGGCGCCGGAGTGGAACAGAAGATGGAGGAGGTGAAGGAGAGTCTGAGGAAGGCGAAGGTGAGCCGGGTGAAGGCGGAGTCTCGGCTGGCCCTGCTGCTCTCGGCAGGGGTTGATGTGGAGCCCTGGGTGTCCAGCGCCATGAGCCAGGCCAACGAGGagctggagaaagagaggaggctCAGCGAGGCCCGTCTGTCCAATGGAGACATCTCCCCCATGGGGGACGAATTTGAGTTCACCGATTTTGATGACTTTGATGAGAACAGTGATATTTTCACAGAGGTGTCCTCAGGCCCCTCCCCACAAGGCTACCCCCTGCCATGCCAGGTTCTCTACAGCTACCAGGCATGTCAGGCTGATGAACTGTCAATCACAGAGGGGGAGGAGCTACATGTGATTGAAGATGGAGACATGGAGGACTGGCTGAAGGCACGCAATGCTGCAGGCCAAGAGGGCTATGTCCCTGAGAGGTACTTGCACTTCCTCCGGACGTCTTCGGAGGGAGCTGTGCCGCAGAGAGTCCCAGGGAGCCTCCACACTGACTGGCCCTCCGGCACCTCCGAGACTTCCCCGGACTTCTACGGGCAGGACCATTCAACACACACAGGAGGGCTGGCGCGGGCGCTGTATGAATACTGCGGGCAGAGCGCTGAGGAGCTGTCCTTTCCGGAGGGGGCGCTGATCCGCTTGCGGCGCCGTAGCTACGGGGACGTGGACGACGGCTTCTGGGAGGGCGAACTGCACGGCCGGGTGGGAGTGTTCCCCTCGCTGGTGGTGGAGGtgctgggagagggagatgaggaggaggaggaggatgaggaagaggaagtgAGTGTTCCGACCCCGACCCCAACCcctcctcccttctcccctCCTGTCCCCATCCTCAATGCCTCTCCGGGACCACACTGCTCCTCCCCTGCTCCAGGGACCTGGTCGGCACACAGTACGCCACCCAGGGGCCTGGAGGATCGACTGCAGGTGGTGCCGCAAGACATGCTCAGACTGTCGGACAGCAGAGCAGACAGCGGCAGCAGTGCGCACAGCTCCCCCGACCTCTCGGCCCGCAGGATTCGTCCAACACGAGCGCCCCCTCTGCCCCCAGGACACCGACGCTCCCCTCTGCCCTGAAGACACGGGCACCCTGACTGAGAGTGGTGGGCACCGGGCCGGGCCTGGGCACACCACACTCAACCCAGTGGCCTCTCCTCAGTGCCCGGTGTTGGGCGCCCAGTCagcagtgtatatacagtggaCAAAATGTCAGGAATTGCAGTTGTTGATTCACTGtcttaacatttcaattaatcagTCAAGTTTGGCTcagaatgttttattcatgtctgtattgttcttttttatttaacattatttgaattatttaacgtgtaaaacattgtattatttttattattgaaggTTATGCATTTAGTTTCCCATTTCAGATATTCTGTGTCCTAAGTTTCAGTCAGTCGTTCTGGTTCAAATGATCCATACTTCCAAATACAATCAGCAAGTGTTTACAGATCTAGTCTATATTGTGATCAGTTTTTAGGTTAAAAATGCACTGAACTCTGCACccaggtttatttttgtttgtttatcttcctCTGTTAGGTGATCAGGGGGTTTAGGTCTACACAGATCTTAACCCTTATAAAGAAACCGGAATATTTGTAGTCTgctgtatctatatatacatctaaTAGTATTATACAATCTTTATTGCATATTACTCAAAGCCTAAGATAAAAGACTATACATATGGACAGTATTCCACCTTACATATGCAGTGATCTTGCCAGGAGGATCTCACAATTAACACCACATTTAGGCCCACTTTATTAGACAAATTATGCACCTATACAAAATTCCTGGCCCATgtaggtattattattaaaagggaGAACAGaagggtgttttttgtttaaaatatagtaAGTTCTTCAGTTCCAGTTCAGTAAACCCTCTTTGAGTTgtgatgtctgtgtgtgtgtatgtatatttgttttatacaaccAAGACTGTGaatgttttaagtttgtttctgtgaaatatGCAAAGTTGCAATTGGGATAGGCAATGCTGGCGAAATgccaataataaaatcataaagaCACTACATTGAGTTTGGCATGGCTATACAATGGTGCTTTG

Function

GO: NA

KEGG:

id description
K20125 FCHSD; F-BAR and double SH3 domains protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133901 lncRNA downstream 11201 26094805 ~ 26127765 (-) True G107057
TU133880 lncRNA downstream 120233 26017239 ~ 26018733 (-) False AMCG00011465
TU133879 lncRNA downstream 122286 26015984 ~ 26016680 (-) True G107038
TU133878 lncRNA downstream 126519 26009520 ~ 26012447 (-) True G107037
TU133876 lncRNA downstream 132510 26005979 ~ 26006456 (-) True G107035
TU133934 lncRNA upstream 33234 26196112 ~ 26197833 (-) True G107082
TU134042 lncRNA upstream 148965 26311843 ~ 26329609 (-) True G107166
TU134043 lncRNA upstream 225334 26388212 ~ 26409375 (-) True G107167
TU134045 lncRNA upstream 225334 26388212 ~ 26398851 (-) False G107167
TU134049 lncRNA upstream 225334 26388212 ~ 26409375 (-) False G107167
AMCG00011470 mRNA downstream 18951 26113869 ~ 26120015 (-) True AMCG00011470
AMCG00011465 mRNA downstream 119566 26017176 ~ 26019400 (-) True AMCG00011465
AMCG00011463 mRNA downstream 240139 25877496 ~ 25898827 (-) True AMCG00011463
AMCG00011459 mRNA downstream 357874 25779962 ~ 25781092 (-) True AMCG00011459
AMCG00011457 mRNA downstream 408429 25729469 ~ 25730537 (-) True AMCG00011457
AMCG00011474 mRNA upstream 28248 26191126 ~ 26195850 (-) True AMCG00011474
AMCG00011475 mRNA upstream 157143 26320021 ~ 26334761 (-) True AMCG00011475
AMCG00011482 mRNA upstream 185710 26348588 ~ 26362055 (-) True AMCG00011482
AMCG00011480 mRNA upstream 199513 26362391 ~ 26368116 (-) True AMCG00011480
AMCG00011481 mRNA upstream 206443 26369321 ~ 26369867 (-) True AMCG00011481
TU133710 other downstream 1120634 25012205 ~ 25018332 (-) True AMCG00011445
TU133362 other downstream 3078000 23053316 ~ 23060966 (-) True AMCG00011409
TU132729 other downstream 6271064 19865614 ~ 19867902 (-) True AMCG00011356
TU132572 other downstream 6725951 19410368 ~ 19413015 (-) False G105970
TU132457 other downstream 7033697 19102293 ~ 19105269 (-) True G105890
TU134083 other upstream 344065 26506943 ~ 26516507 (-) True AMCG00011485
TU134703 other upstream 3462206 29625084 ~ 29625387 (-) True G107713

Expression Profile