RNA id: AMCG00011470


Basic Information

Item Value
RNA id AMCG00011470
length 1218
RNA type mRNA
GC content 0.52
exon number 14
gene id AMCG00011470
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 26113869 ~ 26120015 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAACCCCATcgcctctctctcacacacagtctGGTTCTACACTATGGTCTCTACAAGAAGATGATGGTGTTCAAGCCGTACAAAGCCTCCCAGCATGATATGTGCCGTTTCCATTCGGAGGATTACATTGACTTCCTGCAGAAGGTCAGCCCCAACAACATGCAGGGCTTCACCAAGAGCCTGAATGCCTTCAACGTCGGAGACGACTGTCCTGTGTTTCCAGGTCTGTTTGAGTTCTGCTCTCGGTACACAGGGGCCTCGCTACAGGGAGCAACACAGTTAAACCATAAGATCTGCGATATTGCGATCAACTGGGCTGGAGGCCTCCACCATGCCAAAAAATTTGAGgcGTCTGGATTTTGCTATGTGAACGACATTGTCATCAGCATTCTGGAGTTGTTGAAGTACCACCCACGCGTCCTATACATTGACATCGACATTCACCACGGTGACGGCGTGCAGGAGGCCTTTTACCTCACCGACCGCGTCATGACCGTGTCCTTCCACAAGTATGGGAACTACTTTTTCCCTGGGACAGGTGACATGTATGAAGTGGGTGCGGAGAGCGGTCGATATTACTGCCTGAACGTCCCGCTGCGAGATGGGATCGACGACCAGAGTTACAGACAATTATTCCAGCCAGTCATTAAGCAGGTGGTGGACTTCTACCAGCCGACCTGTATTGTTCTTCAGTGTGGGGCTGATTCTCTGGGCTGTGACAGACTGGGCTGCTTCAATCTCAGTATAAGGGGCCATGGGGAGTGCGTGGAGTTTGTGAAGAGCTTTAAAATCCCCCTGCTGGTGTTGGGAGGCGGAGGATATACCGTCCGTAATGTGGCTCGATGCTGGACCTACGAGACGTCGCTGCTGGTTGAAGAGTCAATCAGTGACGAGCTGCCGTATAGTGAGTACTTTGAATATTTTGCCCCAGACTTCACACTGCACCCTGACGTCAGCACCAGGATAGAAAACCAGAACTCCAGACAGTACCTGGAGCAGATCCGACAGACAGTGGGTGAGAATCTGAAGATGCTCAACCACGCGCCCAGTGTCCAGATCCACGACGTGCCCTCCGACCTGCTGAGCTACGACCGGACGGACGAGGCAGACCCAGATGAGAGAGGCTCAGAGGACAACTACTCCAGGCCAGAAGCACCCAATGAGTTCTACGATGGTGACCATGACAACGACAAAGAGAGCGATGTGGAGATCTGA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0070932 histone H3 deacetylation biological_process
GO:0070933 histone H4 deacetylation biological_process
GO:0005634 nucleus cellular_component
GO:0032041 NAD-dependent histone deacetylase activity (H3-K14 specific) molecular_function
GO:0097372 NAD-dependent histone deacetylase activity (H3-K18 specific) molecular_function
GO:0046969 NAD-dependent histone deacetylase activity (H3-K9 specific) molecular_function
GO:0046970 NAD-dependent histone deacetylase activity (H4-K16 specific) molecular_function

KEGG:

id description
K11404 HDAC3; histone deacetylase 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133880 lncRNA downstream 95136 26017239 ~ 26018733 (-) False AMCG00011465
TU133879 lncRNA downstream 97189 26015984 ~ 26016680 (-) True G107038
TU133878 lncRNA downstream 101422 26009520 ~ 26012447 (-) True G107037
TU133876 lncRNA downstream 107413 26005979 ~ 26006456 (-) True G107035
TU133694 lncRNA downstream 1122693 24986805 ~ 24991176 (-) True G106885
TU133934 lncRNA upstream 76097 26196112 ~ 26197833 (-) True G107082
TU134042 lncRNA upstream 191828 26311843 ~ 26329609 (-) True G107166
TU134043 lncRNA upstream 268197 26388212 ~ 26409375 (-) True G107167
TU134045 lncRNA upstream 268197 26388212 ~ 26398851 (-) False G107167
TU134049 lncRNA upstream 268197 26388212 ~ 26409375 (-) False G107167
AMCG00011465 mRNA downstream 94469 26017176 ~ 26019400 (-) True AMCG00011465
AMCG00011463 mRNA downstream 215042 25877496 ~ 25898827 (-) True AMCG00011463
AMCG00011459 mRNA downstream 332777 25779962 ~ 25781092 (-) True AMCG00011459
AMCG00011457 mRNA downstream 383332 25729469 ~ 25730537 (-) True AMCG00011457
AMCG00011456 mRNA downstream 408201 25681915 ~ 25705668 (-) True AMCG00011456
AMCG00011469 mRNA upstream 18951 26138966 ~ 26162878 (-) True AMCG00011469
AMCG00011474 mRNA upstream 71111 26191126 ~ 26195850 (-) True AMCG00011474
AMCG00011475 mRNA upstream 200006 26320021 ~ 26334761 (-) True AMCG00011475
AMCG00011482 mRNA upstream 228573 26348588 ~ 26362055 (-) True AMCG00011482
AMCG00011480 mRNA upstream 242376 26362391 ~ 26368116 (-) True AMCG00011480
TU133710 other downstream 1095537 25012205 ~ 25018332 (-) True AMCG00011445
TU133362 other downstream 3052903 23053316 ~ 23060966 (-) True AMCG00011409
TU132729 other downstream 6245967 19865614 ~ 19867902 (-) True AMCG00011356
TU132572 other downstream 6700854 19410368 ~ 19413015 (-) False G105970
TU132457 other downstream 7008600 19102293 ~ 19105269 (-) True G105890
TU134083 other upstream 386928 26506943 ~ 26516507 (-) True AMCG00011485
TU134703 other upstream 3505069 29625084 ~ 29625387 (-) True G107713

Expression Profile